SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database

Prediction criteria: TargetScan sites only     All 6mer or longer seed matches

RefSeq ID: NM_001162501
Gene Symbol: TNRC6B
Description: Homo sapiens trinucleotide repeat containing 6B (TNRC6B), transcript variant 3, mRNA.
Gene Location: chr22(+):40573928-40731812
Browse Associations

Somatic mutations that impact miRNA target sites



Mutation Mutation ID Sample Name Cancer Type
chr22:g.40323328C>T COSN10030680 C0061T [kidney][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-137 ttcaacttGCAATAAatac
20
UUAUUGCU m7a Disrupted -0.130000 no TS No effect
hsa-miR-25-3p ttcaactTGCAATaaatac
20
CAUUGCAC m6b Disrupted -0.125000 no TS No effect
hsa-miR-32-5p ttcaactTGCAATAaatac
20
UAUUGCAC m7a Disrupted -0.128000 no TS No effect
hsa-miR-363-3p ttcaactTGCAATaaatac
20
AAUUGCAC m6b Disrupted -0.121000 no TS No effect
hsa-miR-367-3p ttcaactTGCAATaaatac
20
AAUUGCAC m6b Disrupted -0.128000 no TS No effect
hsa-miR-556-3p ttcaacttGTAATAaatac
2
AUAUUACC m6b Created 0.131000 0.054000 No effect
hsa-miR-92a-3p ttcaactTGCAATAaatac
20
UAUUGCAC m7a Disrupted -0.125000 no TS No effect
hsa-miR-92b-3p ttcaactTGCAATAaatac
20
UAUUGCAC m7a Disrupted -0.121000 no TS No effect

Mutation Mutation ID Sample Name Cancer Type
chr22:g.40323892C>T COSN1262157 HCC85T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-4643 gtgtgtgCATGTGTgttca
2
GACACAUG m7b Created 0.073000 0.078000 -0.010000
hsa-miR-4643 gtgtgtgCATGTGTgttca
0 GACACAUG m7b Created 0.073 0.078 -3.05

Mutation Mutation ID Sample Name Cancer Type
chr22:g.40324588G>T COSN5455986 RK040_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-1253 actcccTCTTCTCctttct
5
AGAGAAGA m7b Created 0.200000 0.296000 No effect
hsa-miR-2467-3p actcCCTCTGCTcctttct
1
AGCAGAGG m8a Disrupted -0.078000 -0.100000 0.180000
hsa-miR-4428 actccctctTCTCCTTtct
1
CAAGGAGA m7b (m6c->m7b) 0.156000 0.209000 No effect
hsa-miR-4434 actccctCTTCTCCTttct
0 AGGAGAAG m8a Created 0.158000 0.141000 -0.150000
hsa-miR-4468 actcccTCTGCTCctttct
5
AGAGCAGA m7b Disrupted 0.024000 -0.023000 No effect
hsa-miR-4516 actccctCTTCTCCtttct
0 GGGAGAAG m7b Created 0.195000 0.215000 No effect
hsa-miR-5197-3p actccCTCTTCTcctttct
4
AAGAAGAG m7b Created 0.482000 0.586000 -0.010000
hsa-miR-5703 actccctCTTCTCCTttct
0 AGGAGAAG m8a Created 0.117000 0.128000 -0.010000

Mutation Mutation ID Sample Name Cancer Type
chr22:g.40324701G>A COSN8612740 4000_T [lung][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-4635 gtaCTTCAAGcgtttcctt
15
UCUUGAAG m7b (m7b->m6b) 0.191000 0.147000 0.010000
hsa-miR-5707 gtactTCAAACGTttcctt
0 ACGUUUGA m8a Created no TS -0.106000 No effect

Mutation Mutation ID Sample Name Cancer Type
chr22:g.40325351G>A COSN8018995 8047815 [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-1323 catttcagtAGTTTTGtga
9
UCAAAACU m7b (m6c->m7b) 0.539000 0.623000 -0.460000
hsa-miR-181a-2-3p cattTCAGTGGTtttgtga
2
ACCACUGA m8a Disrupted -0.164000 -0.078000 2.790000
hsa-miR-497-3p catttcaGTGGTTTtgtga
17
CAAACCAC m7b Disrupted 0.122000 0.102000 0.010000
hsa-miR-548aa catttcagTGGTTTTgtga
7
AAAAACCA m7b Disrupted 0.349000 0.201000 0.020000
hsa-miR-548ap-3p catttcagTGGTTTTgtga
7
AAAAACCA m7b Disrupted 0.349000 0.201000 0.610000
hsa-miR-548o-3p catttcagtAGTTTTGtga
9
CCAAAACU m7b (m6c->m7b) 0.560000 0.681000 -0.020000
hsa-miR-548t-3p catttcagTGGTTTTgtga
7
AAAAACCA m7b Disrupted 0.349000 0.201000 0.020000
hsa-miR-606 catttcAGTAGTTTtgtga
2
AAACUACU m8a Created 0.007000 0.021000 -0.360000

Mutation Mutation ID Sample Name Cancer Type
chr22:g.40325390C>G COSN8018996 8034061 [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3154 gtagCCCTTCTGgcttacc
0 CAGAAGGG m8a Disrupted -0.029000 -0.087000 No effect
hsa-miR-4457 gtagcCCTTGTGgcttacc
0 UCACAAGG m7b Created 0.051000 0.118000 No effect
hsa-miR-449b-3p gtagccctTGTGGCTtacc
3
CAGCCACA m7b Created -0.117000 -0.139000 -0.080000

Mutation Mutation ID Sample Name Cancer Type
chr22:g.40325655G>A COSN1262158 HX4T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-4672 tctCTGTGTAgagcaaagt
12
UUACACAG m7b (m6b->m7b) 0.239000 0.334000 -0.010000
hsa-miR-5691 tctctgtgtAGAGCAAagt
1
UUGCUCUG m7a (m6b->m7a) -0.001000 0.061000 No effect
hsa-miR-4672 tctCTGTGTAgagcaaagt
0 UUACACAG m7b (m6b->m7b) 0.239 0.334 -0.01
hsa-miR-5691 tctctgtgtAGAGCAAagt
0 UUGCUCUG m7a (m6b->m7a) -0.001 0.061 No effect

Mutation Mutation ID Sample Name Cancer Type
chr22:g.40326582C>T COSN5992757 RK199_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3175 ctgaaaTCTCCCCtagtaa
0 CGGGGAGA m7b Disrupted -0.342000 -0.190000 0.010000
hsa-miR-4699-5p ctgaAATCTTCcctagtaa
0 AGAAGAUU m7b Created no TS 0.044000 -0.160000
hsa-miR-4747-5p ctgaaatCTTCCCTagtaa
8
AGGGAAGG m7a Created 0.062000 0.062000 -0.080000
hsa-miR-5196-5p ctgaaatCTTCCCTagtaa
8
AGGGAAGG m7a Created 0.051000 0.051000 No effect
hsa-miR-5584-5p ctgaaatcTTCCCTagtaa
0 CAGGGAAA m6b Created 0.056000 0.062000 -0.780000


Mutation Mutation ID Sample Name Cancer Type
chr22:g.40327340A>G COSN1899289 RK007_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr22:g.40327342A>G COSN1899290 RK100_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-1206 aaaataaATGAACAaacgt
18
UGUUCAUG m7a Created -0.002000 0.035000 -0.010000
hsa-miR-4729 aaaATAAATGAacaaacgt
21
UCAUUUAU m8a Created 0.219000 0.434000 -0.040000
hsa-miR-5696 aaaaTAAATGAacaaacgt
0 CUCAUUUA m7b Created no TS 0.209000 -2.320000
hsa-miR-1206 aaaataaATGAACAaacgt
0 UGUUCAUG m7a Created -0.002 0.035 -0.01
hsa-miR-4729 aaaATAAATGAacaaacgt
0 UCAUUUAU m8a Created 0.219 0.434 -2.08
hsa-miR-5696 aaaaTAAATGAacaaacgt
0 CUCAUUUA m7b Created no TS 0.209 -8.54

Mutation Mutation ID Sample Name Cancer Type
chr22:g.40327616T>A COSN1899291 RK051_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-2116-5p gcagtgaccTAAGAACagg
9
GGUUCUUA m7b (m7b->m6c) 0.230000 0.130000 No effect
hsa-miR-5587-5p gcaGTGACCAaagaacagg
2
AUGGUCAC m7b (m6b->m7b) 0.052000 0.014000 No effect
hsa-miR-9-5p gcagtgACCAAAGAacagg
16
UCUUUGGU m8a Created 0.215000 0.337000 -0.470000
hsa-miR-2116-5p gcagtgaccTAAGAACagg
0 GGUUCUUA m7b (m7b->m6c) 0.23 0.13 No effect
hsa-miR-5587-5p gcaGTGACCAaagaacagg
0 AUGGUCAC m7b (m6b->m7b) 0.052 0.014 No effect
hsa-miR-9-5p gcagtgACCAAAGAacagg
0 UCUUUGGU m8a Created 0.215 0.337 -0.47

Mutation Mutation ID Sample Name Cancer Type
chr22:g.40328217T>A COSN1262159 HX17T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3920 ttTAATCAGTgtcccccca
2
ACUGAUUA m8a (m8a->m7a) 0.048000 0.095000 -0.350000
hsa-miR-4522 tttaatCAGAGTCccccca
0 UGACUCUG m7b Created no TS -0.041000 -0.650000
hsa-miR-4652-5p tttaatcagAGTCCCCcca
5
AGGGGACU m7b (m6c->m7b) -0.108000 -0.206000 -0.020000
hsa-miR-4714-5p tttaaTCAGAGTcccccca
0 AACUCUGA m7b Created 0.022000 0.010000 -1.270000
hsa-miR-3920 ttTAATCAGTgtcccccca
0 ACUGAUUA m8a (m8a->m7a) 0.048 0.095 -0.35
hsa-miR-4522 tttaatCAGAGTCccccca
0 UGACUCUG m7b Created no TS -0.041 -0.65
hsa-miR-4652-5p tttaatcagAGTCCCCcca
0 AGGGGACU m7b (m6c->m7b) -0.108 -0.206 No effect
hsa-miR-4714-5p tttaaTCAGAGTcccccca
0 AACUCUGA m7b Created 0.022 0.01 -1.27

Mutation Mutation ID Sample Name Cancer Type
chr22:g.40328282C>G COSN5992758 RK210_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-4496 cttgaTTTCCTatgagtat
0 GAGGAAAC m6b Disrupted 0.199000 0.116000 No effect
hsa-miR-5093 cttgATTTCCTatgagtat
6
AGGAAAUG m7a Disrupted 0.375000 0.375000 No effect

Mutation Mutation ID Sample Name Cancer Type
chr22:g.40328517C>T COSN8010737 PCSI_0356_Pa_P_526 [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-5585-3p gcaaCTATTCActcatttt
0 CUGAAUAG m7b Disrupted 0.053000 no TS No effect

Mutation Mutation ID Sample Name Cancer Type
chr22:g.40328800T>A COSN1899292 RK126_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-2116-5p tagaaAAGAACCatttttt
9
GGUUCUUA m7a Created 0.230000 0.230000 No effect
hsa-miR-218-2-3p tagaaaaGAACCATttttt
5
CAUGGUUC m7b Created 0.022000 -0.035000 No effect
hsa-miR-224-3p tagaaaagaACCATTTTtt
4
AAAAUGGU m8a (m7b->m8a) -0.156000 -0.113000 -0.070000
hsa-miR-4694-3p tagaaaagaTCCATTTttt
0 CAAAUGGA m7b (m7b->m6c) 0.238000 0.190000 No effect
hsa-miR-522-3p tagaaaagaACCATTTTtt
4
AAAAUGGU m8a (m7b->m8a) -0.166000 -0.151000 -0.150000
hsa-miR-2116-5p tagaaAAGAACCatttttt
0 GGUUCUUA m7a Created 0.23 0.23 No effect
hsa-miR-218-2-3p tagaaaaGAACCATttttt
0 CAUGGUUC m7b Created 0.022 -0.035 No effect
hsa-miR-224-3p tagaaaagaACCATTTTtt
0 AAAAUGGU m8a (m7b->m8a) -0.156 -0.113 -2.86
hsa-miR-4694-3p tagaaaagaTCCATTTttt
0 CAAAUGGA m7b (m7b->m6c) 0.238 0.19 7.11
hsa-miR-522-3p tagaaaagaACCATTTTtt
0 AAAAUGGU m8a (m7b->m8a) -0.166 -0.151 -0.15


Mutation Mutation ID Sample Name Cancer Type
chr22:g.40329032C>A 0_598 Melanoma
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr22:g.40329291A>G COSN5992759 RK136_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-365a-3p ctattgaGGGCATTgtcat
13
UAAUGCCC m7b Created -0.020000 -0.095000 No effect
hsa-miR-365b-3p ctattgaGGGCATTgtcat
13
UAAUGCCC m7b Created -0.020000 -0.095000 No effect

Mutation Mutation ID Sample Name Cancer Type
chr22:g.40329851C>T COSN9166207 AOCS-166-1-2 [ovary][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-1292 aatttaaatCGTTCCCttt
2
UGGGAACG m7b (m7b->m6c) -0.152000 -0.026000 1.680000

Mutation Mutation ID Sample Name Cancer Type
chr22:g.40330834A>G COSN8612741 202_T [lung][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-1247-3p ggaagTCCCGGGagcagct
2
CCCCGGGA m7b Created -0.064000 -0.230000 -0.050000
hsa-miR-1343 ggaagtCCCAGGAGcagct
1
CUCCUGGG m8a Disrupted -0.011000 -0.004000 No effect
hsa-miR-4268 ggaagtcccAGGAGCagct
9
GGCUCCUC m6b Disrupted 0.002000 0.003000 No effect
hsa-miR-4448 ggaagtcccAGGAGCagct
9
GGCUCCUU m6b Disrupted 0.011000 0.004000 -0.020000
hsa-miR-4532 ggaagtCCCGGGagcagct
2
CCCCGGGG m6b Created -0.069000 -0.141000 No effect

Mutation Mutation ID Sample Name Cancer Type
chr22:g.40331227G>A COSN10030681 C0075T [kidney][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3680-3p gctgttgATGCAAAcaggg
9
UUUUGCAU m7b Disrupted 0.707000 0.544000 No effect
hsa-miR-4711-5p gctgtTGATGCAaacaggg
2
UGCAUCAG m7a Disrupted 0.016000 -0.017000 0.010000
hsa-miR-557 gctgttgaTGCAAACaggg
9
GUUUGCAC m7a Disrupted 0.437000 0.437000 No effect

Mutation Mutation ID Sample Name Cancer Type
chr22:g.40331314A>G COSN8997426 8051709 [pancreas][NS][carcinoid-endocrine_tumour][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-4517 tctgaaaTCATATTTtatt
11
AAAUAUGA m8a Disrupted 0.165000 0.135000 No effect


Mutation Mutation ID Sample Name Cancer Type
chr22:g.40331424A>G COSN1899293 RK177_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr22:g.40332118G>A COSN9166208 AOCS-165-1-X [ovary][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-4310 gcttcactcATGCTGacct
0 GCAGCAUU m6b Created 0.037000 0.093000 No effect

Mutation Mutation ID Sample Name Cancer Type
chr22:g.40332482A>G COSN15590858 C0026T [kidney][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-4684-3p ttatTTGCAACAcacagta
0 UGUUGCAA m8a Disrupted -0.161000 -0.169000 0.020000

Mutation Mutation ID Sample Name Cancer Type
chr22:g.40332615C>T COSN5771338 HX33T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-143-5p tgtgcagggCTGCACaggc
13
GGUGCAGU m6b Disrupted -0.004000 -0.048000 No effect
hsa-miR-3173-5p tgtGCAGGGCtgcacaggc
4
UGCCCUGC m7b (m7b->m6b) -0.012000 no TS No effect
hsa-miR-3944-5p tgtgcaggGCTGCACAggc
13
UGUGCAGC m8a Disrupted -0.307000 -0.312000 No effect
hsa-miR-4690-3p tgtgcaGGGCTGCacaggc
1
GCAGCCCA m7a Disrupted -0.271000 -0.271000 No effect

Mutation Mutation ID Sample Name Cancer Type
chr22:g.40333085A>T ICGC_B36B1F86-2A78-11E2-8335-12FD496BB9B8 CPCG_0102_Pr_P_P2 ProstateCancer(OICR,CA)
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-125a-3p gctcaCACCTGTaatccca
0 ACAGGUGA m7a Created NA NA No effect
hsa-miR-3934 gctcACACCTGtaatccca
0 UCAGGUGU m7b Created no TS 0.066 No effect
hsa-miR-552 gctcaCACCTGTaatccca
0 AACAGGUG m7b Created -0.085 -0.031 No effect

Mutation Mutation ID Sample Name Cancer Type
chr22:g.40333571A>C TNRC6B_E21_UTR_3 SJHYPO126_D Hypodiploid_ALL
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-1283 tcatTTTGTAGttcacaga
0 UCUACAAA m7b Disrupted 0.072 no TS 0.01
hsa-miR-887 tcattttgtCGTTCACaga
0 GUGAACGG m7a (m6b->m7a) NA NA No effect

Mutation Mutation ID Sample Name Cancer Type
chr22:g.40333997G>T COSN8612742 202_T [lung][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-100-3p aaggaagAAGCTTGattat
17
CAAGCUUG m7a Disrupted 0.048000 0.048000 No effect
hsa-miR-103a-2-5p aaggAAGAAGCTtgattat
0 AGCUUCUU m8a Disrupted 0.264000 0.194000 No effect
hsa-miR-4778-3p aagGAAGAAGcttgattat
9
UCUUCUUC m7b (m7b->m6b) 0.349000 0.276000 0.110000

Mutation Mutation ID Sample Name Cancer Type
chr22:g.40334160G>C COSN8612743 4537_T [lung][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-129-1-3p gctcccaAAGGGCTTtgct
14
AAGCCCUU m8a Disrupted -0.023000 no TS No effect
hsa-miR-129-2-3p gctcccaAAGGGCTTtgct
14
AAGCCCUU m8a Disrupted -0.023000 no TS No effect

Mutation Mutation ID Sample Name Cancer Type
chr22:g.40334178C>T COSN8010738 PCSI_0083_Pa_P_526 [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-2467-3p tgatCTCTGCacttctttc
1
AGCAGAGG m6b Disrupted -0.078000 -0.120000 No effect
hsa-miR-3678-3p tgatCTCTGCActtctttc
3
CUGCAGAG m7b Disrupted -0.087000 -0.109000 -0.010000
hsa-miR-3919 tgaTCTCTGCacttctttc
2
GCAGAGAA m7a (m7a->m6a) 0.348000 0.348000 No effect
hsa-miR-4797-5p tgatCTCTGTacttctttc
3
GACAGAGU m6b Created -0.011000 0.062000 No effect
hsa-miR-519a-3p tgatctcTGCACTTctttc
15
AAAGUGCA m7b Disrupted 0.066000 -0.025000 No effect
hsa-miR-519b-3p tgatctcTGCACTTctttc
15
AAAGUGCA m7b Disrupted 0.066000 -0.025000 No effect
hsa-miR-519c-3p tgatctcTGCACTTctttc
15
AAAGUGCA m7b Disrupted 0.066000 -0.025000 No effect
hsa-miR-5585-5p tgatctctGTACTTCtttc
17
UGAAGUAC m7b Created -0.006000 0.037000 No effect

Mutation Mutation ID Sample Name Cancer Type
chr22:g.40335002T>- ICGC_sm444574 RK109_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-2467-3p attgatgctCTCTGCaagt
0 AGCAGAGG m6b Disrupted -0.078000 -0.017000 No effect
hsa-miR-298 attgatgCTTCTGCaagt
0 AGCAGAAG m7b Created 0.334000 0.171000 No effect
hsa-miR-3678-3p attgatgctCTCTGCAagt
0 CUGCAGAG m7b (m7b->m6c) -0.087000 0.059000 No effect
hsa-miR-3919 attgatgcTCTCTGCaagt
0 GCAGAGAA m7a Disrupted 0.348000 0.348000 0.020000

Mutation Mutation ID Sample Name Cancer Type
chr22:g.40335016T>C COSN5771339 HX21T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-548ag caagTTACCTTTaagtgtt
2
AAAGGUAA m8a Disrupted -0.042000 no TS No effect
hsa-miR-548ai caagTTACCTTTaagtgtt
2
AAAGGUAA m8a Disrupted -0.089000 no TS 0.010000
hsa-miR-548m caagtTACCTTTaagtgtt
3
CAAAGGUA m7b Disrupted -0.022000 0.080000 0.010000
hsa-miR-570-5p caagTTACCTTTaagtgtt
2
AAAGGUAA m8a Disrupted -0.089000 no TS 0.010000

Mutation Mutation ID Sample Name Cancer Type
chr22:g.40335692T>G COSN8612744 381_T [lung][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-186-3p attttaTTTGGGaaagata
1
GCCCAAAG m6b Created 0.199000 0.054000 -0.010000

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



Germline mutations in target sites of miRNAs in somatic mutation table

Location SNP ID Ancestral
Allele
Allele miR ID Conservation miRSite FuncClass Validation context+
score change
40324291 rs75472094 T
G hsa-miR-548aa
hsa-miR-548ac
hsa-miR-548ap-3p
hsa-miR-548d-3p
hsa-miR-548h-3p
hsa-miR-548t-3p
hsa-miR-548z
0 tttcTGGTTTTtt
tttctGGTTTTTt
tttcTGGTTTTtt
tttctGGTTTTTt
tttctGGTTTTTt
tttcTGGTTTTtt
tttctGGTTTTTt
Created
Created
Created
Created
Created
Created
Created
N
N
N
N
N
N
N
0.001
-0.004
0.001
0.024
0.006
0.001
0.006
40324700 rs41281265 A A hsa-miR-3616-5p
hsa-miR-4635
hsa-miR-573
17
15
17
ACTTCAAgcgttt
aCTTCAAGcgttt
ACTTCAAgcgttt
Disrupted
Disrupted
Disrupted
N
N
N
0.083
0.044
0.086
G hsa-miR-6078
hsa-miR-614
11
11
actTCAGGCGttt
acttcAGGCGTTt
Created
Created
N
N
-0.191
-0.091
40325184 rs140341933 A A hsa-miR-4797-5p
3
CTCTGTAacttgc
Disrupted
N
0.053
C hsa-miR-542-3p
3
ctCTGTCACttgc
Created
N
0.019
40325350 rs150375767 T T hsa-miR-181a-2-3p
hsa-miR-497-3p
hsa-miR-548aa
hsa-miR-548ap-3p
hsa-miR-548t-3p
2
7
7
7
7
ttTCAGTGGtttt
tttcaGTGGTTTt
tttcagTGGTTTT
tttcagTGGTTTT
tttcagTGGTTTT
Disrupted
Disrupted
Disrupted
Disrupted
Disrupted
N
N
N
N
N
-0.086
0.02
0.148
0.148
0.148
C hsa-miR-548at-3p
hsa-miR-548ay-3p
7
7
tttcagCGGTTTT
tttcagCGGTTTT
Created
Created
N
N
0.078
0.096
40326619 rs190843530 C C hsa-miR-4428
hsa-miR-4434
hsa-miR-4516
hsa-miR-5703
hsa-miR-6770-5p
1
13
13
13
11
cctTCTCCTTgtc
cCTTCTCCttgtc
cCTTCTCCttgtc
cCTTCTCCttgtc
CCTTCTCcttgtc
Disrupted
Disrupted
Disrupted
Disrupted
Disrupted
N
N
N
N
N
0.069
0.057
0.057
0.066
0.021
T hsa-miR-3185
13
cCTTCTTCttgtc
Created
N
0.097
40326725 rs181982707 A A hsa-miR-376a-5p
hsa-miR-376c-3p
13
14
GAATCTAtgtaaa
gaaTCTATGTAaa
Disrupted
Disrupted
N
N
0.035
0.011
C hsa-miR-4756-3p
hsa-miR-4797-5p
14
14
gaATCTCTGtaaa
gaatCTCTGTAaa
Created
Created
N
N
-0.006
0.017
40326781 rs186548735 G G hsa-miR-365a-3p
hsa-miR-365b-3p
13
13
atataGGCATTAc
atataGGCATTAc
Disrupted
Disrupted
N
N
-0.037
-0.037
A hsa-miR-4796-5p
hsa-miR-513b-3p
12
13
aTATAGACAttac
atataGACATTAc
Created
Created
N
N
-0.045
0.039
40326844 rs145785758 G G hsa-miR-495-3p
hsa-miR-5688
4
4
acctccGTTTGTT
acctccGTTTGTT
Disrupted
Disrupted
N
N
0.17
0.132
A hsa-miR-3689d
hsa-miR-4694-3p
hsa-miR-4802-5p
hsa-miR-6851-5p
hsa-miR-7-1-3p
hsa-miR-7-2-3p
4
5
5
4
4
4
ACCTCCAtttgtt
accTCCATTTgtt
aCCTCCATttgtt
ACCTCCAtttgtt
acctccATTTGTT
acctccATTTGTT
Created
Created
Created
Created
Created
Created
N
N
N
N
N
N
-0.029
0.111
-0.115
-0.029
0.209
0.209
40327231 rs140994992 - TG hsa-miR-4643
1
acgcaCATGTGTgtg
Unknown
N
0.001
-
40327849 rs199665035 T T hsa-miR-5584-5p
12
TTTCCCTtttttt
Disrupted
N
-0.003
C hsa-miR-6783-5p
13
tTTCCCCTttttt
Created
N
-0.097
40329020 rs10707775 - A hsa-miR-129-5p
hsa-miR-3680-3p
hsa-miR-450b-5p
hsa-miR-507
hsa-miR-557
hsa-miR-6516-5p
1
9
9
9
9
10
tactGCAAAAAAa
tacTGCAAAAaaa
tacTGCAAAAaaa
tacTGCAAAAaaa
tacTGCAAAAaaa
tACTGCAAAaaaa
Unknown
Unknown
Unknown
Unknown
Unknown
Unknown
N
N
N
N
N
N
-0.003
-0.002
-0.002
-0.002
-0.002
-0.003
-
40329071 rs146054399 T T hsa-miR-3148
4
attgtgTTTTTCC
Disrupted
N
0.185
G hsa-miR-497-3p
hsa-miR-548aa
hsa-miR-548ap-3p
hsa-miR-548t-3p
3
3
3
3
attGTGGTTTtcc
attgTGGTTTTcc
attgTGGTTTTcc
attgTGGTTTTcc
Created
Created
Created
Created
N
N
N
N
0.038
0.106
0.106
0.106
40329574 rs186432501 C C hsa-miR-1343-5p
hsa-miR-202-3p
hsa-miR-3150a-3p
hsa-miR-3175
hsa-miR-6763-5p
hsa-miR-6799-5p
hsa-miR-6825-5p
hsa-miR-939-5p
7
3
7
7
7
3
6
7
ccatacCTCCCCA
ccATACCTCccca
ccatacCTCCCCA
ccatacCTCCCCA
ccatacCTCCCCA
ccatACCTCCCca
ccataCCTCCCCA
ccatacCTCCCCA
Disrupted
Disrupted
Disrupted
Disrupted
Disrupted
Disrupted
Disrupted
Disrupted
N
N
N
N
N
N
N
N
0.004
0.121
0.041
-0.005
0.032
0.002
-0.096
No Change
A hsa-miR-3171
hsa-miR-4450
hsa-miR-6857-5p
3
7
7
ccATACATCccca
ccatacATCCCCA
ccatacATCCCCA
Created
Created
Created
N
N
N
0.18
-0.007
0.064
40329748 rs186990745 G G hsa-miR-372-5p
hsa-miR-606
hsa-miR-888-5p
6
2
2
ATTTGAGtagttt
atttgAGTAGTTt
aTTTGAGTAgttt
Disrupted
Disrupted
Disrupted
N
N
N
0.065
0.007
0.083
T hsa-miR-3129-3p
hsa-miR-5583-5p
2
2
atttgATTAGTTt
atttgATTAGTTt
Created
Created
N
N
0.097
0.069
40329948 rs35459648 - - hsa-miR-129-5p
hsa-miR-3680-3p
hsa-miR-450b-5p
hsa-miR-507
hsa-miR-518a-5p
hsa-miR-527
hsa-miR-548aw
hsa-miR-557
2
2
2
2
2
2
2
2
tctttGCAAAAAg
tcttTGCAAAAag
tctTTGCAAAAag
tcttTGCAAAAag
tCTTTGCAAaaag
tCTTTGCAAaaag
tcTTTGCAAaaag
tcttTGCAAAAag
Unknown
Unknown
Unknown
Unknown
Unknown
Unknown
Unknown
Unknown
N
N
N
N
N
N
N
N
0.15
0.087
0.15
0.086
0.061
0.061
0.108
0.09
C hsa-miR-1271-5p
hsa-miR-182-5p
hsa-miR-4470
hsa-miR-96-5p
2
2
2
2
tcttTGCCAAAaag
tctTTGCCAAAaag
tcTTTGCCAaaaag
tcttTGCCAAAaag
Unknown
Unknown
Unknown
Unknown
N
N
N
N
0.032
0.046
0.038
0.025
40330179 rs139919 T T hsa-miR-548aa
hsa-miR-548ac
hsa-miR-548ap-3p
hsa-miR-548d-3p
hsa-miR-548h-3p
hsa-miR-548t-3p
hsa-miR-548z
1
1
1
1
1
1
1
ggaTGGTTTTtgt
ggatGGTTTTTgt
ggaTGGTTTTtgt
ggatGGTTTTTgt
ggatGGTTTTTgt
ggaTGGTTTTtgt
ggatGGTTTTTgt
Disrupted
Disrupted
Disrupted
Disrupted
Disrupted
Disrupted
Disrupted
N
N
N
N
N
N
N
0.047
0.076
0.047
0.086
0.067
0.047
0.067
40330225 rs142296906 G G hsa-miR-4468
hsa-miR-545-5p
3
4
tttaCTGCTCAca
TTTACTGctcaca
Disrupted
Disrupted
N
N
-0.014
0.104
T hsa-miR-1253
hsa-miR-548ao-5p
hsa-miR-548ax
hsa-miR-6770-5p
3
4
4
3
tttaCTTCTCAca
tTTACTTCtcaca
tTTACTTCtcaca
tttaCTTCTCAca
Created
Created
Created
Created
N
N
N
N
0.053
0.044
0.044
0.058
40330273 rs183337879 G G hsa-miR-3529-3p
3
gatgcTGTTGTAg
Disrupted
N
0.106
T hsa-miR-1283
hsa-miR-4422
hsa-miR-548e-5p
5
1
1
gatgctTTTGTAG
gATGCTTTtgtag
gaTGCTTTTgtag
Created
Created
Created
N
N
N
0.111
0.104
0.125
40330758 rs139921 G A hsa-miR-103a-2-5p
hsa-miR-4778-3p
hsa-miR-6875-3p
3
4
4
ggAAGAAGCtatc
gGAAGAAGctatc
GGAAGAAgctatc
Created
Created
Created
N
N
N
0.094
0.115
0.085
G hsa-miR-1236-3p
hsa-miR-2682-3p
hsa-miR-6781-3p
hsa-miR-6819-3p
hsa-miR-6877-3p
hsa-miR-877-3p
4
3
3
0
0
4
GGAAGAGgctatc
ggAAGAGGCtatc
ggAAGAGGCtatc
ggaAGAGGCTAtc
ggaAGAGGCTAtc
gGAAGAGGctatc
Disrupted
Disrupted
Disrupted
Disrupted
Disrupted
Disrupted
N
N
N
N
N
N
0.043
0.047
-0.009
-0.04
-0.04
0.067
40330814 rs187714041 A
G hsa-miR-301a-5p
hsa-miR-345-5p
hsa-miR-4680-5p
hsa-miR-4714-5p
1
1
1
1
aaGTCAGAGttcc
aAGTCAGAgttcc
aagtcAGAGTTCc
aagTCAGAGTtcc
Created
Created
Created
Created
N
N
N
N
No Change
0.06
0.096
0.063
40331645 rs138003976 - A hsa-miR-4668-3p
hsa-miR-548c-3p
12
12
tgttGGATTTTtt
tgttgGATTTTTt
Unknown
Unknown
N
N
0.014
0.146
- hsa-miR-548aa
hsa-miR-548ac
hsa-miR-548ap-3p
hsa-miR-548d-3p
hsa-miR-548h-3p
hsa-miR-548t-3p
hsa-miR-548z
12
12
12
12
12
12
12
tgtTGGTTTTtt
tgttGGTTTTTt
tgtTGGTTTTtt
tgttGGTTTTTt
tgttGGTTTTTt
tgtTGGTTTTtt
tgttGGTTTTTt
Unknown
Unknown
Unknown
Unknown
Unknown
Unknown
Unknown
N
N
N
N
N
N
N
0.001
0.029
0.001
0.01
0.029
0.001
0.029
40332400 rs13055089 C C hsa-miR-5197-3p
3
cCTCTTCTttgtc
Disrupted
N
0.113
40334137 rs147609001 A A hsa-miR-300
hsa-miR-381-3p
hsa-miR-624-3p
1
1
1
cCTTGTATctctt
cCTTGTATctctt
CCTTGTAtctctt
Disrupted
Disrupted
Disrupted
N
N
N
0.17
0.189
0.057
G hsa-miR-4457
hsa-miR-4731-3p
hsa-miR-4801
1
1
1
CCTTGTGtctctt
cCTTGTGTctctt
cCTTGTGTctctt
Created
Created
Created
N
N
N
0.09
0.154
0.145
40334600 rs185451024 T T hsa-miR-4729
hsa-miR-6083
8
6
gagatATAAATGc
gaGATATAAAtgc
Disrupted
Disrupted
N
N
0.138
0.15
C hsa-miR-3149
6
gagATACAAAtgc
Created
N
0.104

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