SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
RefSeq ID: NM_001204459
Gene Symbol: TNFRSF19
Description: Homo sapiens tumor necrosis factor receptor superfamily, member 19 (TNFRSF19), transcript variant 3, mRNA.
Gene Location: chr13(+):24144508-24250244
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Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr13:g.23673437T>C COSN7396286 8066852 [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-495 gtactccTTTGTTaggctt
 2
 AAACAAAC m6b Disrupted 0.044000 no TS 0.020000
hsa-miR-7-1-3p gtactccTTTGTTaggctt
 2
 CAACAAAU m6b Disrupted 0.120000 0.082000 0.140000
hsa-miR-7-2-3p gtactccTTTGTTaggctt
 2
 CAACAAAU m6b Disrupted 0.111000 0.073000 1.250000

Mutation Mutation ID Sample Name Cancer Type
chr13:g.23675917G>T COSN1603863 RK159_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change

No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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