SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
RefSeq ID: NM_003844
Gene Symbol: TNFRSF10A
Description: Homo sapiens tumor necrosis factor receptor superfamily, member 10a (TNFRSF10A), mRNA.
Gene Location: chr8(-):23048969-23082680
Browse Associations
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr8:g.23191525A>G ICGC_DC57E62C-2A78-11E2-B303-24FD496BB9B8 CPCG_0103_Pr_P_P6 ProstateCancer(OICR,CA)
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-378a-5p tgagGTCAGGAGttcaaga
 0 CUCCUGAC m8a Created no TS -0.149 -2.3
hsa-miR-4256 tgaGGTCAGAagttcaaga
 0 AUCUGACC m7b (m7b->m6c) -0.408 no TS 4.95
hsa-miR-4680-5p tgaggtcagGAGTTCaaga
 0 AGAACUCU m6b Created no TS -0.1 -1.94

Mutation Mutation ID Sample Name Cancer Type
chr8:g.23191624T>- ICGC_ssm_v3_106522 HCC4T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change

No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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