SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
RefSeq ID: NM_002160
Gene Symbol: TNC
Description: Homo sapiens tenascin C (TNC), mRNA.
Gene Location: chr9(-):117782804-117880486
Browse Associations
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr9:g.115019780C>T COSN6376854 RK190_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3657 gtaGGGACACtcatacttc
 0 UGUGUCCC m7b (m7b->m6c) -0.299000 no TS 0.010000
hsa-miR-4658 gtagggACACTCAtacttc
 0 GUGAGUGU m7b Disrupted -0.169000 no TS 2.120000

Mutation Mutation ID Sample Name Cancer Type
chr9:g.115020659T>A COSN9276132 C0031T [kidney][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-126-5p ttaatatTAATAATataat
 14
 CAUUAUUA m7b Created -0.034000 -0.106000 -0.280000
hsa-miR-369-3p ttaaTATTATTaatataat
 0 AAUAAUAC m7a Disrupted NA NA 0.010000
hsa-miR-4795-3p ttaatattAATAATATaat
 14
 AUAUUAUU m8a Created -0.043000 -0.121000 -0.010000
hsa-miR-5692b ttaATATTATTaatataat
 13
 AAUAAUAU m8a Disrupted -0.085000 no TS 0.040000
hsa-miR-5692c ttaATATTATTaatataat
 13
 AAUAAUAU m8a Disrupted -0.085000 no TS 0.040000
hsa-miR-656 ttaatattaATAATATaat
 16
 AAUAUUAU m7b (m6b->m7b) 0.010000 -0.094000 -0.590000

Mutation Mutation ID Sample Name Cancer Type
chr9:g.115020744T>C COSN4885916 tumor_4121361 [haematopoietic_and_lymphoid_tissue][NS][lymphoid_neoplasm][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-2115-5p atgtgtcatTGGAAGCcat
 6
 AGCUUCCA m7b (m7b->m6b) -0.310000 -0.101000 -0.130000
hsa-miR-425-5p atGTGTCATTggaagccat
 2
 AAUGACAC m8a (m8a->m7b) -0.190000 -0.163000 -0.030000

Mutation Mutation ID Sample Name Cancer Type
chr9:g.115021021C>T COSN5118407 HCC27 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-1915-3p catggatCCCTGGGGccaa
 2
 CCCCAGGG m8a Disrupted -0.203000 no TS 0.010000
hsa-miR-4661-3p catGGATCCTtggggccaa
 0 CAGGAUCC m7b (m6c->m7b) no TS -0.241000 0.340000
hsa-miR-4713-3p catGGATCCCtggggccaa
 2
 UGGGAUCC m7b (m7b->m6c) -0.242000 no TS 3.260000
hsa-miR-1915-3p catggatCCCTGGGGccaa
 2
 CCCCAGGG m8a Disrupted -0.203000 no TS 0.010000
hsa-miR-4661-3p catGGATCCTtggggccaa
 0 CAGGAUCC m7b (m6c->m7b) no TS -0.241000 0.340000
hsa-miR-4713-3p catGGATCCCtggggccaa
 2
 UGGGAUCC m7b (m7b->m6c) -0.242000 no TS 3.260000

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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