SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_001032284 |
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Gene Symbol: | TMPO |
Description: | Homo sapiens thymopoietin (TMPO), transcript variant 2, mRNA. |
Gene Location: | chr12(+):98909350-98944157 |
Browse Associations |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr12:g.98548003A>G | COSN1595816 | RK027_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr12:g.98548752T>C | COSN9740226 | C0075T | [kidney][NS][other][neoplasm] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr12:g.98548753G>T | COSN9740227 | C0075T | [kidney][NS][other][neoplasm] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-5692a |
ttcATTATTTcattgtctt |
1 |
CAAAUAAU | m7b | (m6b->m7b) | 0.252000 | 0.387000 |
-0.030000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr12:g.98548856T>C | ICGC_AB03071E-2A78-11E2-8335-12FD496BB9B8 | CPCG_0102_Pr_P_P2 | ProstateCancer(OICR,CA) | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr12:g.98548935A>G | COSN1595817 | RK041_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-1306-3p |
ctgGCCAACGTggtgaaac |
0 | ACGUUGGC | m8a | Created | no TS | -0.160000 |
-5.680000 |
|
hsa-miR-197-3p |
ctggccaacGTGGTGAAac |
2 |
UUCACCAC | m8a | (m7b->m8a) | -0.007000 | -0.098000 |
-2.150000 |
|
hsa-miR-4716-5p |
ctggccAACATGGtgaaac |
8 |
UCCAUGUU | m7b | Disrupted | -0.110000 | -0.177000 | No effect | |
hsa-miR-4781-3p |
ctggCCAACATggtgaaac |
2 |
AAUGUUGG | m7b | Disrupted | 0.082000 | no TS |
0.010000 |
|
hsa-miR-1306-3p |
ctgGCCAACGTggtgaaac |
0 | ACGUUGGC | m8a | Created | no TS | -0.16 |
-5.68 |
|
hsa-miR-197-3p |
ctggccaacGTGGTGAAac |
0 | UUCACCAC | m8a | (m7b->m8a) | -0.007 | -0.098 |
-2.15 |
|
hsa-miR-4716-5p |
ctggccAACATGGtgaaac |
2 |
UCCAUGUU | m7b | Disrupted | -0.11 | -0.177 | No effect | |
hsa-miR-4781-3p |
ctggCCAACATggtgaaac |
2 |
AAUGUUGG | m7b | Disrupted | 0.082 | no TS |
0.01 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr12:g.98549386C>T | ICGC_86E72C3E-2A78-11E2-96E7-04FD496BB9B8 | CPCG_0102_Pr_P_P1 | ProstateCancer(OICR,CA) | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-4433-3p |
gtctcgaACTCCTGacctc |
0 | ACAGGAGU | m7b | Created | no TS | -0.029 |
-0.01 |
|
hsa-miR-4459 |
gtctcgaaCTCCTGacctc |
0 | CCAGGAGG | m6b | Created | no TS | 0.016 |
-0.01 |
|
hsa-miR-4768-3p |
gtctcgaaCTCCTGacctc |
0 | CCAGGAGA | m6b | Created | no TS | 0.002 |
-0.02 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr12:g.98549640A>C | COSN1595818 | RK046_C02 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-3115 |
cagtcattgCCCATAaagc |
0 | AUAUGGGU | m6b | Created | no TS | -0.119000 |
-6.280000 |
|
hsa-miR-5587-5p |
cagtcatTGACCATaaagc |
0 | AUGGUCAC | m7a | Disrupted | NA | NA |
0.200000 |
|
hsa-miR-584-5p |
cagtcattgACCATAAagc |
9 |
UUAUGGUU | m7a | (m7a->m6b) | -0.076000 | no TS |
2.610000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr12:g.98549790T>C | COSN5796706 | EOPC-05_tumor | [prostate][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-3156-5p |
tttAGATCTTTcatacaca |
3 |
AAAGAUCU | m8a | Disrupted | -0.225000 | -0.074000 |
3.000000 |
|
hsa-miR-4712-3p |
tttagatCTCTCATacaca |
0 | AAUGAGAG | m7b | Created | no TS | -0.252000 |
-2.400000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr12:g.98550115T>C | COSN14604543 | 8012342 | [pancreas][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-3619-3p |
ttaaaagtATGGTCCaaat |
3 |
GGGACCAU | m7b | Disrupted | -0.460000 | no TS | No effect |
hsa-miR-4776-5p |
ttaaaagtaTGGTCCAaat |
3 |
GUGGACCA | m7b | (m7b->m6c) | -0.505000 | -0.228000 | No effect |
hsa-miR-3619-3p |
ttaaaagtATGGTCCaaat |
3 |
GGGACCAU | m7b | Disrupted | -0.460000 | no TS | No effect |
hsa-miR-4776-5p |
ttaaaagtaTGGTCCAaat |
3 |
GUGGACCA | m7b | (m7b->m6c) | -0.505000 | -0.228000 | No effect |
Location | SNP ID | Ancestral Allele |
Allele | miR ID | Conservation | miRSite | FuncClass | Validation | context+ score change |
---|---|---|---|---|---|---|---|---|---|
98548411 | rs1058309 | A | |||||||
T |
hsa-miR-5692a hsa-miR-625-3p |
9 13 |
tTTATTTAtagta tttattTATAGTA |
Created Created |
N N |
0.107 -0.047 |
|||
98548939 | rs12816564 | T | T |
hsa-miR-197-3p hsa-miR-5096 |
2 2 |
acaTGGTGAAacc acatGGTGAAAcc |
Disrupted Disrupted |
N N |
-0.007 -0.032 |
G |
hsa-miR-2355-5p hsa-miR-3679-3p |
2 2 |
acaTGGGGAAacc acatGGGGAAAcc |
Created Created |
N N |
-0.031 -0.018 |