SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database

Prediction criteria: TargetScan sites only     All 6mer or longer seed matches

RefSeq ID: NM_001032283
Gene Symbol: TMPO
Description: Homo sapiens thymopoietin (TMPO), transcript variant 2, mRNA.
Gene Location: chr12(+):98909350-98944157
Browse Associations

Somatic mutations that impact miRNA target sites




Mutation Mutation ID Sample Name Cancer Type
chr12:g.98548003A>G COSN1595816 RK027_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



Mutation Mutation ID Sample Name Cancer Type
chr12:g.98548752T>C COSN9740226 C0075T [kidney][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr12:g.98548753G>T COSN9740227 C0075T [kidney][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-5692a ttcATTATTTcattgtctt
1
CAAAUAAU m7b (m6b->m7b) 0.252000 0.387000 -0.030000


Mutation Mutation ID Sample Name Cancer Type
chr12:g.98548856T>C ICGC_AB03071E-2A78-11E2-8335-12FD496BB9B8 CPCG_0102_Pr_P_P2 ProstateCancer(OICR,CA)
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr12:g.98548935A>G COSN1595817 RK041_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-1306-3p ctgGCCAACGTggtgaaac
0 ACGUUGGC m8a Created no TS -0.160000 -5.680000
hsa-miR-197-3p ctggccaacGTGGTGAAac
2
UUCACCAC m8a (m7b->m8a) -0.007000 -0.098000 -2.150000
hsa-miR-4716-5p ctggccAACATGGtgaaac
8
UCCAUGUU m7b Disrupted -0.110000 -0.177000 No effect
hsa-miR-4781-3p ctggCCAACATggtgaaac
2
AAUGUUGG m7b Disrupted 0.082000 no TS 0.010000
hsa-miR-1306-3p ctgGCCAACGTggtgaaac
0 ACGUUGGC m8a Created no TS -0.16 -5.68
hsa-miR-197-3p ctggccaacGTGGTGAAac
0 UUCACCAC m8a (m7b->m8a) -0.007 -0.098 -2.15
hsa-miR-4716-5p ctggccAACATGGtgaaac
2
UCCAUGUU m7b Disrupted -0.11 -0.177 No effect
hsa-miR-4781-3p ctggCCAACATggtgaaac
2
AAUGUUGG m7b Disrupted 0.082 no TS 0.01

Mutation Mutation ID Sample Name Cancer Type
chr12:g.98549386C>T ICGC_86E72C3E-2A78-11E2-96E7-04FD496BB9B8 CPCG_0102_Pr_P_P1 ProstateCancer(OICR,CA)
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-4433-3p gtctcgaACTCCTGacctc
0 ACAGGAGU m7b Created no TS -0.029 -0.01
hsa-miR-4459 gtctcgaaCTCCTGacctc
0 CCAGGAGG m6b Created no TS 0.016 -0.01
hsa-miR-4768-3p gtctcgaaCTCCTGacctc
0 CCAGGAGA m6b Created no TS 0.002 -0.02

Mutation Mutation ID Sample Name Cancer Type
chr12:g.98549640A>C COSN1595818 RK046_C02 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3115 cagtcattgCCCATAaagc
0 AUAUGGGU m6b Created no TS -0.119000 -6.280000
hsa-miR-5587-5p cagtcatTGACCATaaagc
0 AUGGUCAC m7a Disrupted NA NA 0.200000
hsa-miR-584-5p cagtcattgACCATAAagc
9
UUAUGGUU m7a (m7a->m6b) -0.076000 no TS 2.610000

Mutation Mutation ID Sample Name Cancer Type
chr12:g.98549790T>C COSN5796706 EOPC-05_tumor [prostate][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3156-5p tttAGATCTTTcatacaca
3
AAAGAUCU m8a Disrupted -0.225000 -0.074000 3.000000
hsa-miR-4712-3p tttagatCTCTCATacaca
0 AAUGAGAG m7b Created no TS -0.252000 -2.400000

Mutation Mutation ID Sample Name Cancer Type
chr12:g.98550115T>C COSN14604543 8012342 [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3619-3p ttaaaagtATGGTCCaaat
3
GGGACCAU m7b Disrupted -0.460000 no TS No effect
hsa-miR-4776-5p ttaaaagtaTGGTCCAaat
3
GUGGACCA m7b (m7b->m6c) -0.505000 -0.228000 No effect
hsa-miR-3619-3p ttaaaagtATGGTCCaaat
3
GGGACCAU m7b Disrupted -0.460000 no TS No effect
hsa-miR-4776-5p ttaaaagtaTGGTCCAaat
3
GUGGACCA m7b (m7b->m6c) -0.505000 -0.228000 No effect

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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