SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_001136103 |
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Gene Symbol: | TMEM132C |
Description: | Homo sapiens transmembrane protein 132C (TMEM132C), mRNA. |
Gene Location: | chr12(+):128751947-129192460 |
Browse Associations |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr12:g.128706674A>G | COSN6408335 | HX36T | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-2115-3p |
tatatTTCTGATaaaggag |
0 | CAUCAGAA | m7b | Created | no TS | -0.254000 | No effect | |
hsa-miR-361-5p |
tatattTCTGATAAaggag |
0 | UUAUCAGA | m8a | Created | no TS | -0.306000 |
-1.460000 |
|
hsa-miR-374a-3p |
tatatttCTGATAAaggag |
0 | CUUAUCAG | m7b | Created | no TS | -0.239000 |
-1.440000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr12:g.128707303G>C | COSN8700589 | AOCS-061-1-8 | [ovary][NS][other][neoplasm] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr12:g.128707367C>T | COSN1562780 | RK148_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-497-3p |
gggctTGGTTTatcacaag |
0 | CAAACCAC | m6b | Created | no TS | 0.009000 |
-0.670000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr12:g.128707504A>G | COSN7316474 | 8066491 | [pancreas][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-3136-5p |
agattgTCAGTCAactgtg |
0 | CUGACUGA | m7b | Created | no TS | -0.281000 |
-7.810000 |
|
hsa-miR-4439 |
agattgTCAGTCAactgtg |
0 | GUGACUGA | m7b | Created | no TS | -0.271000 |
-3.190000 |
|
hsa-miR-4513 |
agattGTCAGTCaactgtg |
0 | AGACUGAC | m7b | Created | no TS | -0.376000 |
-8.790000 |
|
hsa-miR-888-3p |
agatTGTCAGTCaactgtg |
2 |
GACUGACA | m8a | Created | -0.116000 | -0.318000 |
-0.230000 |
|
hsa-miR-943 |
agattgtCAGTCAactgtg |
0 | CUGACUGU | m6b | Created | no TS | -0.110000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr12:g.128707614C>T | COSN5713880 | HX18T | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-3179 |
aagCCCCTTCgtgatcacc |
3 |
AGAAGGGG | m7b | (m7b->m6b) | -0.202000 | no TS |
3.580000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr12:g.128707639G>A | COSN4727754 | tumor_4127766 | [haematopoietic_and_lymphoid_tissue][NS][lymphoid_neoplasm][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-4531 |
cagTTCTCCATgtgctcca |
0 | AUGGAGAA | m8a | Created | no TS | -0.062000 |
-0.050000 |
|
hsa-miR-4717-3p |
cagttctCCATGTGctcca |
0 | ACACAUGG | m7b | Created | no TS | -0.147000 |
-0.210000 |
|
hsa-miR-4802-3p |
cagttcTCCATGTgctcca |
0 | UACAUGGA | m7b | Created | no TS | -0.080000 |
-0.460000 |
|
hsa-miR-5589-3p |
cagttctcCATGTGCtcca |
0 | UGCACAUG | m7b | Created | no TS | -0.106000 |
-0.080000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr12:g.128707697G>A | COSN7611086 | PCSI_0164_Pa_P_526 | [pancreas][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-658 |
atgctCTCCGCaggggggc |
0 | GGCGGAGG | m6b | Disrupted | -0.162000 | no TS |
5.430000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr12:g.128707811G>A | 0_396 | Melanoma | ||||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-1305 |
tggacctTTGAAAAatata |
6 |
UUUUCAAC | m7a | Disrupted | 0.006 | no TS |
0.02 |
hsa-miR-335-3p |
tggaccttTGAAAAAtata |
7 |
UUUUUCAU | m7a | Disrupted | 0.001 | no TS |
-0.01 |
hsa-miR-548m |
tggACCTTTGaaaaatata |
8 |
CAAAGGUA | m7a | (m7a->m6a) | no TS | -0.101 |
0.9 |
hsa-miR-607 |
tggaccTTTGAAaaatata |
6 |
GUUCAAAU | m6b | Disrupted | 0.011 | no TS | No effect |
Location | SNP ID | Ancestral Allele |
Allele | miR ID | Conservation | miRSite | FuncClass | Validation | context+ score change |
---|---|---|---|---|---|---|---|---|---|
128707696 | rs180888188 | C | C |
hsa-miR-5739 hsa-miR-658 |
2 4 |
gCTCTCCGcaggg gctCTCCGCAggg |
Disrupted Disrupted |
N N |
-0.204 -0.162 |
T |
hsa-miR-2467-3p hsa-miR-3158-5p hsa-miR-3678-3p |
4 21 4 |
gctCTCTGCAggg gctcTCTGCAGgg gctCTCTGCAggg |
Created Created Created |
N N N |
-0.063 -0.047 -0.079 |