SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_006068 |
---|---|
Gene Symbol: | TLR6 |
Description: | Homo sapiens toll-like receptor 6 (TLR6), mRNA. |
Gene Location: | chr4(-):38825328-38858438 |
Browse Associations | |
Browse Pathways |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr4:g.38824147C>A | COSN1296775 | HCC118T | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-3649 |
aaacGGTCCCatgcgggaa |
2 |
AGGGACCU | m6b | Disrupted | -0.190000 | no TS |
0.090000 |
|
hsa-miR-4535 |
aaacGGTCCAatgcgggaa |
0 | GUGGACCU | m6b | Created | no TS | -0.173000 |
-0.430000 |
|
hsa-miR-4776-5p |
aaacGGTCCAatgcgggaa |
0 | GUGGACCA | m6b | Created | no TS | -0.166000 |
-2.360000 |
|
hsa-miR-3649 |
aaacGGTCCCatgcgggaa |
2 |
AGGGACCU | m6b | Disrupted | -0.190000 | no TS |
0.090000 |
|
hsa-miR-4535 |
aaacGGTCCAatgcgggaa |
0 | GUGGACCU | m6b | Created | no TS | -0.173000 |
-0.430000 |
|
hsa-miR-4776-5p |
aaacGGTCCAatgcgggaa |
0 | GUGGACCA | m6b | Created | no TS | -0.166000 |
-2.360000 |
|
hsa-miR-3649 |
aaacGGTCCCatgcgggaa |
0 | AGGGACCU | m6b | Disrupted | -0.19 | no TS |
0.09 |
|
hsa-miR-4535 |
aaacGGTCCAatgcgggaa |
0 | GUGGACCU | m6b | Created | no TS | -0.173 |
-0.43 |
|
hsa-miR-4776-5p |
aaacGGTCCAatgcgggaa |
0 | GUGGACCA | m6b | Created | no TS | -0.166 |
-2.36 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr4:g.38824192C>T | COSN6830184 | RK308_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-217 |
ttgtagatgTGCAGTAaaa |
0 | UACUGCAU | m7a | (m6a->m7a) | no TS | -0.108000 |
-4.600000 |
|
hsa-miR-4418 |
ttgtagatgTGCAGTaaaa |
0 | CACUGCAG | m6b | Created | no TS | -0.095000 |
-0.020000 |
|
hsa-miR-509-3-5p |
ttgtagatgTGCAGTAaaa |
0 | UACUGCAG | m7a | (m6a->m7a) | no TS | -0.102000 |
-0.010000 |
|
hsa-miR-509-5p |
ttgtagatgTGCAGTAaaa |
0 | UACUGCAG | m7a | (m6a->m7a) | no TS | -0.098000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr4:g.38824637T>G | COSN5154907 | PD4115a | [breast][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-1226-3p |
caacccCTGGTGAacagat |
0 | UCACCAGC | m7a | Created | no TS | -0.064000 |
-5.470000 |
|
hsa-miR-1911-3p |
caaccCCTGGTGaacagat |
0 | CACCAGGC | m7a | Created | NA | NA |
-6.090000 |
|
hsa-miR-421 |
caacccCTGTTGAacagat |
3 |
AUCAACAG | m7b | Disrupted | -0.065000 | -0.053000 | No effect | |
hsa-miR-4709-5p |
caacccCTGTTGaacagat |
2 |
ACAACAGU | m6b | Disrupted | -0.156000 | -0.145000 |
0.010000 |
|
hsa-miR-4733-3p |
caaccCCTGGTGaacagat |
0 | CCACCAGG | m7b | Created | no TS | -0.166000 |
-2.900000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr4:g.38824771A>T | COSN9789858 | C0074T | [kidney][NS][other][neoplasm] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr4:g.38824957G>A | COSN8614582 | SS6003317 | [oesophagus][NS][carcinoma][adenocarcinoma] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-1228-3p |
aaattagccAGGTGTGgtg |
3 |
UCACACCU | m7b | (m6b->m7b) | 0.002000 | 0.039000 |
0.750000 |
|
hsa-miR-4794 |
aaatTAGCCAGgtgtggtg |
2 |
UCUGGCUA | m7b | Created | -0.001000 | -0.036000 | No effect | |
hsa-miR-664-5p |
aaatTAGCCAGgtgtggtg |
2 |
ACUGGCUA | m7b | Created | -0.001000 | -0.073000 |
-0.030000 |
|
hsa-miR-941 |
aaattaGCCGGGTGtggtg |
1 |
CACCCGGC | m8a | Disrupted | -0.221000 | no TS |
2.820000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr4:g.38824981G>C | ICGC_74E628E6-2A78-11E2-96E7-04FD496BB9B8 | CPCG_0102_Pr_P_P1 | ProstateCancer(OICR,CA) | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-1324 |
accCTGTCTGtactaaaaa |
0 | CCAGACAG | m7b | (m7b->m6c) | -0.223 | -0.219 | No effect | |
hsa-miR-411-5p |
accctgtcTCTACTAaaaa |
0 | UAGUAGAC | m7a | Created | no TS | 0.015 |
-0.15 |
|
hsa-miR-4524a-3p |
accCTGTCTCtactaaaaa |
0 | UGAGACAG | m7b | (m6c->m7b) | no TS | 0.011 | No effect | |
hsa-miR-4524b-3p |
acCCTGTCTCtactaaaaa |
0 | GAGACAGG | m8a | (m7b->m8a) | -0.033 | -0.033 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr4:g.38825722T>C | COSN14928706 | LP6007544-DNA_A01 | [oesophagus][NS][carcinoma][adenocarcinoma] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-214-3p |
ggtagCCTGCTGTgcaaag |
0 | ACAGCAGG | m8a | Created | no TS | 0.012000 |
-0.870000 |
|
hsa-miR-3619-5p |
ggtagCCTGCTGtgcaaag |
0 | UCAGCAGG | m7b | Created | no TS | -0.016000 |
-0.620000 |
|
hsa-miR-4438 |
ggtAGCCTGTtgtgcaaag |
2 |
CACAGGCU | m7b | (m7b->m6c) | 0.026000 | no TS |
0.010000 |
|
hsa-miR-4690-5p |
ggtaGCCTGCTgtgcaaag |
4 |
GAGCAGGC | m7b | Created | -0.157000 | -0.262000 |
-3.380000 |
|
hsa-miR-5003-5p |
ggtagccTGTTGTGcaaag |
0 | UCACAACA | m7b | Disrupted | -0.121000 | -0.216000 |
0.010000 |
|
hsa-miR-761 |
ggtagCCTGCTGtgcaaag |
0 | GCAGCAGG | m7b | Created | no TS | -0.007000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr4:g.38826167A>T | COSN15271152 | SM-4B295 | [oesophagus][NS][carcinoma][adenocarcinoma] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-377-3p |
ttgcagacaTGTGTGAggg |
0 | AUCACACA | m7b | (m6b->m7b) | no TS | -0.037000 |
-0.070000 |
|
hsa-miR-4288 |
ttGCAGACAAgtgtgaggg |
0 | UUGUCUGC | m8a | (m8a->m7b) | -0.227000 | -0.147000 |
0.060000 |
|
hsa-miR-4643 |
ttgcagaCATGTGTgaggg |
2 |
GACACAUG | m7b | Created | -0.071000 | -0.095000 |
-0.180000 |
|
hsa-miR-4789-3p |
ttgcagacATGTGTGaggg |
2 |
CACACAUA | m7a | Created | -0.213000 | -0.213000 | No effect | |
hsa-miR-654-3p |
ttgCAGACATgtgtgaggg |
0 | UAUGUCUG | m7b | (m6c->m7b) | no TS | -0.017000 |
-0.770000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr4:g.38826901A>T | COSN9039901 | AOCS-155-3-5 | [ovary][NS][other][neoplasm] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-345-5p |
cagttaGAGTCAGCccagt |
0 | GCUGACUC | m8a | Created | no TS | -0.192000 |
-0.050000 |
|
hsa-miR-4656 |
cagttagagTCAGCCCAgt |
1 |
UGGGCUGA | m8a | (m7a->m8a) | -0.162000 | -0.377000 |
-0.010000 |
|
hsa-miR-4675 |
cagttagagACAGCCCagt |
1 |
GGGGCUGU | m7b | (m7b->m6b) | -0.388000 | -0.167000 |
-0.900000 |
|
hsa-miR-4741 |
cagttagagACAGCCCagt |
1 |
CGGGCUGU | m7b | (m7b->m6b) | -0.377000 | -0.164000 |
0.040000 |
|
hsa-miR-626 |
cagttagAGACAGCccagt |
0 | AGCUGUCU | m7b | Disrupted | -0.121000 | 0.033000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr4:g.38826945C>A | COSN1083572 | TCGA-AP-A059-01 | [endometrium][NS][carcinoma][endometrioid_carcinoma] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-1245b-3p |
atgttTCATCTGgggaact |
2 |
UCAGAUGA | m7b | Disrupted | -0.133000 | no TS |
0.450000 |
hsa-miR-2355-5p |
atgtttcatCTGGGGAact |
2 |
AUCCCCAG | m7b | (m7b->m6b) | -0.627000 | -0.359000 |
3.830000 |
hsa-miR-1245b-3p |
atgttTCATCTGgggaact |
2 |
UCAGAUGA | m7b | Disrupted | -0.133000 | no TS |
0.450000 |
hsa-miR-2355-5p |
atgtttcatCTGGGGAact |
2 |
AUCCCCAG | m7b | (m7b->m6b) | -0.627000 | -0.359000 |
3.830000 |
hsa-miR-1245b-3p |
atgttTCATCTGgggaact |
0 | UCAGAUGA | m7b | Disrupted | -0.133 | no TS |
0.45 |
hsa-miR-2355-5p |
atgtttcatCTGGGGAact |
0 | AUCCCCAG | m7b | (m7b->m6b) | -0.627 | -0.359 |
3.83 |
Location | SNP ID | Ancestral Allele |
Allele | miR ID | Conservation | miRSite | FuncClass | Validation | context+ score change |
---|---|---|---|---|---|---|---|---|---|
38824857 | rs142441314 | A | |||||||
A |
hsa-miR-199a-3p hsa-miR-199b-3p hsa-miR-3129-5p hsa-miR-4473 hsa-miR-512-3p hsa-miR-520f-3p hsa-miR-626 hsa-miR-6876-3p |
0 |
gacagcACTACTG gacagcACTACTG gacagcACTACTG gacAGCACTActg gaCAGCACTActg gacAGCACTActg GACAGCActactg GACAGCActactg |
Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted |
N N N N N N N N |
0.042 0.042 0.06 0.018 -0.099 0.002 -0.071 -0.074 |
|||
38826895 | rs34400891 | - | - |
hsa-miR-1587 hsa-miR-3620-5p hsa-miR-378g hsa-miR-4463 hsa-miR-4492 hsa-miR-4498 hsa-miR-4656 hsa-miR-4675 hsa-miR-4741 hsa-miR-5001-5p hsa-miR-6829-5p hsa-miR-762 hsa-miR-873-3p |
1 1 1 1 1 1 1 1 1 1 1 1 5 |
aCAGCCCAgtctc aCAGCCCAgtctc acAGCCCAGtctc acagcCCAGTCTc aCAGCCCAgtctc aCAGCCCAgtctc aCAGCCCAgtctc ACAGCCCAgtctc ACAGCCCAgtctc aCAGCCCAgtctc aCAGCCCAgtctc aCAGCCCAgtctc acagccCAGTCTC |
Unknown Unknown Unknown Unknown Unknown Unknown Unknown Unknown Unknown Unknown Unknown Unknown Unknown |
N N N N N N N N N N N N N |
-0.224 -0.243 -0.191 -0.002 -0.145 -0.148 -0.162 -0.187 -0.186 -0.148 -0.16 -0.151 -0.007 |
C |
hsa-miR-185-3p hsa-miR-4283 hsa-miR-4489 |
1 1 1 |
aCAGCCCCAgtctc acAGCCCCAgtctc acAGCCCCAgtctc |
Unknown Unknown Unknown |
N N N |
-0.451 -0.178 -0.202 |