SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_003266 |
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Gene Symbol: | TLR4 |
Description: | Homo sapiens toll-like receptor 4 (TLR4), transcript variant 1, mRNA. |
Browse Associations | |
Browse Pathways |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr9:g.117714775C>G | COSN6377805 | RK308_C01 | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-130a-3p |
catggTGCACTagatatgc |
0 | CAGUGCAA | m6b | Disrupted | -0.125000 | no TS |
0.100000 |
hsa-miR-130b-3p |
catggTGCACTagatatgc |
0 | CAGUGCAA | m6b | Disrupted | -0.132000 | no TS |
1.100000 |
hsa-miR-301a-3p |
catggTGCACTagatatgc |
0 | CAGUGCAA | m6b | Disrupted | -0.132000 | no TS | No effect |
hsa-miR-301b |
catggTGCACTagatatgc |
0 | CAGUGCAA | m6b | Disrupted | -0.132000 | no TS |
0.290000 |
hsa-miR-3130-3p |
catGGTGCAGtagatatgc |
0 | GCUGCACC | m7b | (m6b->m7b) | -0.122000 | -0.403000 |
-1.210000 |
hsa-miR-3666 |
catggTGCACTagatatgc |
0 | CAGUGCAA | m6b | Disrupted | -0.125000 | no TS |
0.010000 |
hsa-miR-4295 |
catggTGCACTagatatgc |
0 | CAGUGCAA | m6b | Disrupted | -0.122000 | no TS | No effect |
hsa-miR-4418 |
catggTGCAGTagatatgc |
0 | CACUGCAG | m6b | Created | -0.144000 | -0.245000 |
-0.500000 |
hsa-miR-4473 |
catggtGCACTAGatatgc |
0 | CUAGUGCU | m7a | Disrupted | NA | NA | No effect |
hsa-miR-4671-3p |
catggTGCACTAgatatgc |
0 | UUAGUGCA | m7b | Disrupted | -0.164000 | no TS |
0.010000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr9:g.117715294C>T | COSN8294334 | PCSI_0083_Pa_P_526 | [pancreas][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-3646 |
tccagttTTCATTTTttta |
0 | AAAAUGAA | m8a | Disrupted | 0.064000 | 0.085000 | No effect |
hsa-miR-3662 |
tccagtttTCATTTTttta |
0 | GAAAAUGA | m7b | Disrupted | 0.089000 | 0.101000 |
1.040000 |
hsa-miR-548ac |
tccaGTTTTTattttttta |
0 | CAAAAACC | m6b | Created | no TS | 0.060000 |
-1.770000 |
hsa-miR-548ae |
tccAGTTTTTattttttta |
0 | CAAAAACU | m7b | (m6b->m7b) | no TS | 0.023000 |
-0.280000 |
hsa-miR-548ah-3p |
tccAGTTTTTattttttta |
0 | CAAAAACU | m7b | (m6b->m7b) | no TS | 0.023000 |
-0.280000 |
hsa-miR-548aj-3p |
tccAGTTTTTAttttttta |
0 | UAAAAACU | m8a | Created | no TS | 0.023000 |
-0.250000 |
hsa-miR-548am-3p |
tccAGTTTTTattttttta |
0 | CAAAAACU | m7b | (m6b->m7b) | no TS | 0.023000 |
-0.240000 |
hsa-miR-548aq-3p |
tccAGTTTTTattttttta |
0 | CAAAAACU | m7b | (m6b->m7b) | no TS | 0.023000 |
-0.280000 |
hsa-miR-548d-3p |
tccaGTTTTTattttttta |
0 | CAAAAACC | m6b | Created | no TS | 0.074000 |
0.620000 |
hsa-miR-548e |
tcCAGTTTTTattttttta |
0 | AAAAACUG | m8a | (m7a->m8a) | -0.129000 | -0.156000 |
0.100000 |
hsa-miR-548f |
tcCAGTTTTTattttttta |
0 | AAAAACUG | m8a | (m7a->m8a) | -0.129000 | -0.156000 |
0.160000 |
hsa-miR-548h-3p |
tccaGTTTTTattttttta |
0 | CAAAAACC | m6b | Created | no TS | 0.060000 |
0.620000 |
hsa-miR-548x-3p |
tccAGTTTTTAttttttta |
0 | UAAAAACU | m8a | Created | no TS | 0.023000 |
-0.250000 |
hsa-miR-548z |
tccaGTTTTTattttttta |
0 | CAAAAACC | m6b | Created | no TS | 0.060000 |
0.620000 |
hsa-miR-570-3p |
tccaGTTTTCattttttta |
0 | CGAAAACA | m6b | Disrupted | 0.011000 | no TS |
0.390000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr9:g.117715798G>T | COSN6377806 | RK308_C01 | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-1304-3p |
tcaaggCAGTGAGtataca |
0 | UCUCACUG | m7b | Created | no TS | -0.016000 | No effect |
hsa-miR-3680-5p |
tcaaggcAGTGAGTataca |
0 | GACUCACU | m7b | Created | -0.140000 | -0.198000 |
0.370000 |
hsa-miR-4798-3p |
tcaaggcaGTGAGTataca |
0 | AACUCACG | m6b | Created | -0.180000 | -0.246000 |
-0.080000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr9:g.117715997A>C | ICGC_A64AC6D0-2A78-11E2-8335-12FD496BB9B8 | CPCG_0102_Pr_P_P2 | ProstateCancer(OICR,CA) | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-335-3p |
agggaaATGAAAAtaaaaa |
0 | UUUUUCAU | m7b | Disrupted | 0.419 | 0.324 |
-1.05 |
hsa-miR-33a-5p |
agggaAATGCAaataaaaa |
0 | GUGCAUUG | m6b | Created | no TS | 0.047 |
-0.56 |
hsa-miR-33b-5p |
agggaAATGCAaataaaaa |
0 | GUGCAUUG | m6b | Created | no TS | 0.047 |
-0.03 |
hsa-miR-3680-3p |
agggaaATGCAAAtaaaaa |
0 | UUUUGCAU | m7b | Created | no TS | -0.02 |
-3.56 |
hsa-miR-5696 |
agggAAATGAaaataaaaa |
0 | CUCAUUUA | m6b | Disrupted | 0.26 | 0.13 |
0.01 |
hsa-miR-579 |
agggAAATGAAaataaaaa |
0 | UUCAUUUG | m7a | Disrupted | 0.261 | 0.131 | No effect |
hsa-miR-644b-3p |
agggAAATGAAaataaaaa |
0 | UUCAUUUG | m7a | Disrupted | 0.26 | 0.127 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr9:g.117716245A>C | COSN15189125 | SM-4AX86 | [oesophagus][NS][carcinoma][adenocarcinoma] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr9:g.117716353A>T | COSN8120405 | 8066491 | [pancreas][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-501-3p |
aaaatGTGCATatacgtac |
0 | AAUGCACC | m6b | Disrupted | -0.060000 | no TS |
0.030000 |
hsa-miR-502-3p |
aaaatGTGCATatacgtac |
0 | AAUGCACC | m6b | Disrupted | -0.060000 | no TS | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr9:g.117716359G>A | COSN9697627 | AOCS-105-1-9 | [ovary][NS][other][neoplasm] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-297 |
tgcatatACATACAatggg |
0 | AUGUAUGU | m7b | Created | no TS | -0.092000 |
-2.490000 |
hsa-miR-3149 |
tgcatataCATACAAtggg |
0 | UUUGUAUG | m7b | Created | no TS | -0.036000 |
-0.930000 |
hsa-miR-3924 |
tgcatATACATAcaatggg |
0 | AUAUGUAU | m7b | Created | -0.249000 | -0.229000 |
-0.120000 |
hsa-miR-567 |
tgcatatACATACaatggg |
0 | AGUAUGUU | m6b | Created | no TS | -0.003000 |
-1.390000 |
hsa-miR-568 |
tgcaTATACATacaatggg |
0 | AUGUAUAA | m7a | Created | NA | NA |
-0.040000 |
hsa-miR-675-3p |
tgcatataCATACAatggg |
0 | CUGUAUGC | m6b | Created | no TS | -0.017000 |
-0.030000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr9:g.117716616C>T | ICGC_8171647C-2A78-11E2-96E7-04FD496BB9B8 | CPCG_0102_Pr_P_P1 | ProstateCancer(OICR,CA) | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-200a-5p |
tatagtatGTAAGATGaat |
0 | CAUCUUAC | m8a | Created | -0.079 | -0.17 |
-1.01 |
hsa-miR-200b-5p |
tatagtatGTAAGATGaat |
0 | CAUCUUAC | m8a | Created | -0.072 | -0.163 |
-0.8 |
hsa-miR-5689 |
tataGTATGCaagatgaat |
0 | AGCAUACA | m6b | Disrupted | -0.095 | no TS |
2.01 |
hsa-miR-600 |
tatagtaTGTAAGatgaat |
0 | ACUUACAG | m6b | Created | no TS | -0.015 |
-2.48 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr9:g.117716691A>G | COSN6377807 | RK219_C01 | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-424-3p |
gcacttaACGTTTTGttaa |
0 | CAAAACGU | m8a | Created | no TS | -0.097000 |
-1.340000 |
hsa-miR-4698 |
gcacttaaCATTTTGttaa |
0 | UCAAAAUG | m7b | Disrupted | 0.082000 | 0.097000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr9:g.117717019G>A | COSN14906473 | LP6005409-DNA_F02 | [oesophagus][NS][carcinoma][adenocarcinoma] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-1915-3p |
catCCCTGGGtgtgtttcc |
0 | CCCCAGGG | m7b | (m7b->m6b) | -0.192000 | no TS |
3.620000 |
hsa-miR-329 |
catccctgGGTGTGTTtcc |
0 | AACACACC | m8a | Disrupted | -0.169000 | -0.068000 |
0.920000 |
hsa-miR-362-3p |
catccctgGGTGTGTTtcc |
0 | AACACACC | m8a | Disrupted | -0.193000 | -0.074000 |
2.330000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr9:g.117717103G>A | COSN8120406 | 8030032 | [pancreas][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-329 |
gggctGTGTGTatttgaaa |
0 | AACACACC | m6b | Disrupted | -0.169000 | -0.101000 | No effect |
hsa-miR-362-3p |
gggctGTGTGTatttgaaa |
0 | AACACACC | m6b | Disrupted | -0.193000 | -0.119000 |
-0.100000 |
hsa-miR-3941 |
gggctGTGTGTAtttgaaa |
0 | UUACACAC | m7b | Disrupted | -0.141000 | no TS |
0.920000 |
hsa-miR-4672 |
gggCTGTGTAtatttgaaa |
0 | UUACACAG | m7b | (m6b->m7b) | no TS | -0.090000 |
-1.100000 |
hsa-miR-4789-5p |
gggctGTGTATAtttgaaa |
0 | GUAUACAC | m7b | Created | no TS | -0.101000 |
-1.300000 |