SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
RefSeq ID: NM_001195108
Gene Symbol: TLR10
Description: Homo sapiens toll-like receptor 10 (TLR10), transcript variant 2, mRNA.
Gene Location: chr4(-):38773859-38784611
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr4:g.38772449C>G ICGC_9B5F36E8-2A78-11E2-8335-12FD496BB9B8 CPCG_0102_Pr_P_P2 ProstateCancer(OICR,CA)
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-19a-5p ggtGCAAAACTaattgtgg
 0 AGUUUUGC m8a Disrupted -0.155 no TS 2.55
hsa-miR-19b-1-5p ggtGCAAAACTaattgtgg
 0 AGUUUUGC m8a Disrupted -0.155 no TS 1.08
hsa-miR-19b-2-5p ggtGCAAAACTaattgtgg
 0 AGUUUUGC m8a Disrupted -0.155 no TS 0.45
hsa-miR-4275 ggtgcaaaaGTAATTGtgg
 0 CCAAUUAC m7b (m6b->m7b) no TS -0.131 -0.09
hsa-miR-5003-3p ggtgcAAAAGTAattgtgg
 0 UACUUUUC m7a Created no TS 0.016 -1.319

Mutation Mutation ID Sample Name Cancer Type
chr4:g.38772632A>G COSN7489918 8016470 [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change

No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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