SomamiR DB

SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions
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Prediction criteria:	TargetScan sites only All 6mer or longer seed matches

PolymiRTS Database

RefSeq ID:	NM_024817
Gene Symbol:	THSD4
Description:	Homo sapiens thrombospondin, type I, domain containing 4 (THSD4), mRNA.
Gene Location:	chr15(+):71433787-72075722
Browse Associations

Mutation			Mutation ID		Sample Name		Cancer Type
chr15:g.71777794G>T			COSN1179728		BN02T		[liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID	miRSite	Conservation	miRSeed	SeedClass	FuncClass	Wildtype CS+	Mutant CS+	PITA score change
hsa-miR-1275	ggaggcagcTCCCCCAacc	2	GUGGGGGA	m7b	(m6c->m7b)	-0.304000	-0.464000	No effect
hsa-miR-22-3p	ggaGGCAGCTcccccaacc	0	AAGCUGCC	m7b	(m6b->m7b)	no TS	-0.131000	No effect
hsa-miR-4300	ggaggcAGCTCCCccaacc	2	UGGGAGCU	m7b	Created	-0.173000	-0.274000	No effect
hsa-miR-4488	ggaggcagCGCCCCCaacc	0	AGGGGGCG	m7b	Disrupted	-0.508000	-0.103000	0.010000
hsa-miR-4525	ggaggcagcTCCCCCaacc	1	GGGGGGAU	m6b	Created	-0.163000	-0.294000	-0.010000
hsa-miR-4665-5p	ggaggcagcTCCCCCAacc	2	CUGGGGGA	m7b	(m6c->m7b)	-0.316000	-0.462000	No effect
hsa-miR-4697-5p	ggaggcagCGCCCCCaacc	0	AGGGGGCG	m7b	Disrupted	-0.487000	-0.103000	2.600000
hsa-miR-4723-5p	ggaggcagCTCCCCCAacc	1	UGGGGGAG	m8a	Created	-0.302000	-0.601000	No effect
hsa-miR-5010-5p	ggaggcagcTCCCCCaacc	1	AGGGGGAU	m6b	Created	-0.167000	-0.291000	No effect
hsa-miR-558	ggagGCAGCTCccccaacc	5	UGAGCUGC	m7b	Created	-0.291000	-0.375000	No effect
hsa-miR-5591-5p	ggaggcAGCTCCCccaacc	2	UGGGAGCU	m7b	Created	-0.176000	-0.277000	No effect
hsa-miR-5698	ggaggcagCTCCCCCAacc	1	UGGGGGAG	m8a	Created	-0.288000	-0.587000	No effect
hsa-miR-625-5p	ggaggcagcTCCCCCaacc	0	AGGGGGAA	m6b	Created	-0.233000	-0.354000	No effect
hsa-miR-920	ggaggcAGCTCCCCcaacc	2	GGGGAGCU	m8a	Created	-0.176000	-0.240000	No effect
hsa-miR-939	ggaggcaGCTCCCCcaacc	0	UGGGGAGC	m7b	Created	no TS	-0.187000	0.120000
hsa-miR-1275	ggaggcagcTCCCCCAacc	0	GUGGGGGA	m7b	(m6c->m7b)	-0.304	-0.464	0.04
hsa-miR-22-3p	ggaGGCAGCTcccccaacc	0	AAGCUGCC	m7b	(m6b->m7b)	no TS	-0.131	No effect
hsa-miR-4300	ggaggcAGCTCCCccaacc	0	UGGGAGCU	m7b	Created	-0.173	-0.274	No effect
hsa-miR-4488	ggaggcagCGCCCCCaacc	0	AGGGGGCG	m7b	Disrupted	-0.508	-0.103	0.01
hsa-miR-4525	ggaggcagcTCCCCCaacc	0	GGGGGGAU	m6b	Created	-0.163	-0.294	-0.01
hsa-miR-4665-5p	ggaggcagcTCCCCCAacc	0	CUGGGGGA	m7b	(m6c->m7b)	-0.316	-0.462	No effect
hsa-miR-4697-5p	ggaggcagCGCCCCCaacc	0	AGGGGGCG	m7b	Disrupted	-0.487	-0.103	2.6
hsa-miR-4723-5p	ggaggcagCTCCCCCAacc	0	UGGGGGAG	m8a	Created	-0.302	-0.601	No effect
hsa-miR-5010-5p	ggaggcagcTCCCCCaacc	0	AGGGGGAU	m6b	Created	-0.167	-0.291	No effect
hsa-miR-558	ggagGCAGCTCccccaacc	0	UGAGCUGC	m7b	Created	-0.291	-0.375	No effect
hsa-miR-5591-5p	ggaggcAGCTCCCccaacc	0	UGGGAGCU	m7b	Created	-0.176	-0.277	No effect
hsa-miR-5698	ggaggcagCTCCCCCAacc	0	UGGGGGAG	m8a	Created	-0.288	-0.587	No effect
hsa-miR-625-5p	ggaggcagcTCCCCCaacc	0	AGGGGGAA	m6b	Created	-0.233	-0.354	-0.01
hsa-miR-920	ggaggcAGCTCCCCcaacc	0	GGGGAGCU	m8a	Created	-0.176	-0.24	No effect
hsa-miR-939	ggaggcaGCTCCCCcaacc	0	UGGGGAGC	m7b	Created	no TS	-0.187	0.12

Mutation			Mutation ID		Sample Name		Cancer Type
chr15:g.71777807C>T			COSN1683735		RK071_C01		[liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID	miRSite	Conservation	miRSeed	SeedClass	FuncClass	Wildtype CS+	Mutant CS+	PITA score change
hsa-miR-3178	ccaacccaGCGCCCCacta	0	GGGGCGCG	m7a	Disrupted	NA	NA	No effect
hsa-miR-3196	ccaacccagCGCCCCacta	0	CGGGGCGG	m6b	Disrupted	-0.636000	-0.442000	-0.590000
hsa-miR-486-3p	ccaacccagTGCCCCacta	2	CGGGGCAG	m6b	Created	-0.217000	-0.339000	-0.010000
hsa-miR-5589-5p	ccaACCCAGCgccccacta	6	GGCUGGGU	m7b	(m7b->m6b)	-0.338000	-0.267000	0.010000

Mutation			Mutation ID		Sample Name		Cancer Type
chr15:g.71777996A>G			COSN5756347		HX34T		[liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID	miRSite	Conservation	miRSeed	SeedClass	FuncClass	Wildtype CS+	Mutant CS+	PITA score change
hsa-miR-2116-3p	catcccagaATGGGAGGca	5	CCUCCCAU	m8a	(m8a->m7b)	-0.191000	-0.121000	No effect
hsa-miR-3156-3p	catcccagAGTGGGAGgca	4	CUCCCACU	m8a	Created	-0.323000	-0.385000	-0.010000
hsa-miR-326	catCCCAGAGtgggaggca	1	CCUCUGGG	m7b	(m6b->m7b)	0.113000	-0.003000	No effect
hsa-miR-330-5p	catCCCAGAGtgggaggca	1	UCUCUGGG	m7b	(m6b->m7b)	0.114000	-0.030000	-0.010000
hsa-miR-4314	caTCCCAGAGtgggaggca	4	CUCUGGGA	m8a	(m7a->m8a)	-0.456000	-0.322000	No effect
hsa-miR-514a-5p	catcCCAGAGTgggaggca	2	UACUCUGG	m7b	Created	0.042000	-0.028000	-0.060000
hsa-miR-532-3p	catcccagaGTGGGAGGca	2	CCUCCCAC	m8a	(m7b->m8a)	-0.054000	-0.150000	No effect

Mutation			Mutation ID		Sample Name		Cancer Type
chr15:g.71779329A>G			COSN7247896		8015259		[pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID	miRSite	Conservation	miRSeed	SeedClass	FuncClass	Wildtype CS+	Mutant CS+	PITA score change
hsa-miR-1291	gtgctgttCAGGGCCtgct	2	UGGCCCUG	m7b	Disrupted	-0.240000	-0.139000	0.270000
hsa-miR-345-3p	gtgctgTTCAGGGCctgct	3	GCCCUGAA	m8a	Disrupted	0.058000	-0.010000	No effect

Mutation			Mutation ID		Sample Name		Cancer Type
chr15:g.71779615G>A			COSN8815779		SS6003317		[oesophagus][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID	miRSite	Conservation	miRSeed	SeedClass	FuncClass	Wildtype CS+	Mutant CS+	PITA score change
hsa-miR-124-5p	gtgggaggTGAACACcctg	1	CGUGUUCA	m7b	Disrupted	0.120000	no TS	No effect
hsa-miR-1306-5p	gtgGGAGGTGaacaccctg	1	CCACCUCC	m7b	(m7b->m6b)	-0.041000	0.017000	No effect
hsa-miR-4777-3p	gtggGAGGTAaacaccctg	0	AUACCUCA	m6b	Created	no TS	0.011000	No effect

Mutation			Mutation ID		Sample Name		Cancer Type
chr15:g.71779750A>C			COSN9638521		C0009T		[kidney][NS][other][neoplasm]
miRNA Targets Table
miR ID	miRSite	Conservation	miRSeed	SeedClass	FuncClass	Wildtype CS+	Mutant CS+	PITA score change
hsa-miR-1321	tgacCCTCCCTGggaatgg	2	CAGGGAGG	m8a	Created	0.017000	0.057000	No effect
hsa-miR-149-3p	tgaCCCTCCCTgggaatgg	2	AGGGAGGG	m8a	Created	-0.034000	-0.064000	No effect
hsa-miR-1915-3p	tgaccctCCCTGGGaatgg	0	CCCCAGGG	m7b	Created	no TS	-0.063000	No effect
hsa-miR-4270	tgaccCTCCCTGggaatgg	2	UCAGGGAG	m7b	Created	-0.101000	-0.034000	No effect
hsa-miR-4441	tgaccCTCCCTGggaatgg	2	ACAGGGAG	m7b	Created	-0.144000	-0.096000	-0.470000
hsa-miR-4685-5p	tgaccctCCCTGGGaatgg	2	CCCAGGGC	m7a	Created	-0.116000	-0.116000	No effect
hsa-miR-4726-3p	tgaccctcCCTGGGaatgg	1	ACCCAGGU	m6b	Created	-0.035000	-0.045000	No effect
hsa-miR-4728-5p	tgaCCCTCCCtgggaatgg	2	UGGGAGGG	m7b	(m6b->m7b)	-0.063000	-0.075000	No effect
hsa-miR-4739	tgacCCTCCCTgggaatgg	2	AAGGGAGG	m7b	Created	0.017000	0.085000	No effect
hsa-miR-4756-5p	tgacCCTCCCTGggaatgg	2	CAGGGAGG	m8a	Created	0.014000	0.035000	-0.390000
hsa-miR-4802-5p	tgacCCTCCATgggaatgg	2	UAUGGAGG	m7b	Disrupted	-0.112000	-0.168000	0.160000

Mutation			Mutation ID		Sample Name		Cancer Type
chr15:g.71779971A>G			COSN5756348		HX21T		[liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID	miRSite	Conservation	miRSeed	SeedClass	FuncClass	Wildtype CS+	Mutant CS+	PITA score change
hsa-miR-4766-3p	ccaatttTTGCTAattccc	3	AUAGCAAU	m6b	Created	-0.061000	-0.031000	-1.540000
hsa-miR-548p	ccaatTTTTGCTAattccc	2	UAGCAAAA	m8a	Created	0.200000	0.314000	-0.240000

Mutation			Mutation ID		Sample Name		Cancer Type
chr15:g.71780402A>G			COSN5400529		RK085_C01		[liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID	miRSite	Conservation	miRSeed	SeedClass	FuncClass	Wildtype CS+	Mutant CS+	PITA score change
hsa-miR-204-5p	tgaaAAAGGGAAttgtgcc	7	UUCCCUUU	m8a	Created	0.102000	0.139000	-0.010000
hsa-miR-211-5p	tgaaAAAGGGAAttgtgcc	7	UUCCCUUU	m8a	Created	0.091000	0.128000	No effect
hsa-miR-3938	tgaaaaAGGGAATTgtgcc	2	AAUUCCCU	m8a	Created	0.004000	-0.008000	-0.880000
hsa-miR-4755-5p	tgaaaAAGGGAAttgtgcc	2	UUUCCCUU	m7b	Created	-0.007000	0.004000	No effect
hsa-miR-5006-3p	tgaaaAAGGGAAttgtgcc	2	UUUCCCUU	m7b	Created	0.011000	0.022000	-0.050000
hsa-miR-623	tgaaaAAGGGAattgtgcc	2	AUCCCUUG	m6b	Created	0.035000	0.054000	0.140000

Mutation			Mutation ID		Sample Name		Cancer Type
chr15:g.71780978A>G			COSN5756349		HCC99		[liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID	miRSite	Conservation	miRSeed	SeedClass	FuncClass	Wildtype CS+	Mutant CS+	PITA score change
hsa-miR-142-5p	ccACTTTATGgttggaata	1	CAUAAAGU	m8a	(m7a->m8a)	0.286000	0.219000	0.010000
hsa-miR-340-5p	ccaCTTTATAgttggaata	1	UUAUAAAG	m7b	(m7b->m6b)	0.174000	no TS	No effect
hsa-miR-142-5p	ccACTTTATGgttggaata	1	CAUAAAGU	m8a	(m7a->m8a)	0.286000	0.219000	0.010000
hsa-miR-340-5p	ccaCTTTATAgttggaata	1	UUAUAAAG	m7b	(m7b->m6b)	0.174000	no TS	No effect

Mutation			Mutation ID		Sample Name		Cancer Type
chr15:g.71781108A>T			COSN8342050		0007_CRUK_PC_0007_T3_DNA		[prostate][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID	miRSite	Conservation	miRSeed	SeedClass	FuncClass	Wildtype CS+	Mutant CS+	PITA score change
hsa-miR-3714	atcctTGCCTTataaaaca	3	GAAGGCAG	m6b	Created	-0.178000	-0.150000	No effect
hsa-miR-3910	atcctTGCCTTataaaaca	0	AAAGGCAU	m6b	Created	no TS	0.002000	-0.010000

Mutation			Mutation ID		Sample Name		Cancer Type
chr15:g.71781134A>G			COSN1179729		HCC91T		[liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID	miRSite	Conservation	miRSeed	SeedClass	FuncClass	Wildtype CS+	Mutant CS+	PITA score change
hsa-miR-1260a	atggtttacGTGGGAaaat	2	AUCCCACC	m6b	Created	-0.179000	-0.237000	No effect
hsa-miR-1260b	atggtttacGTGGGAaaat	2	AUCCCACC	m6b	Created	-0.179000	-0.237000	-0.010000
hsa-miR-188-3p	atggtttacGTGGGAaaat	0	CUCCCACA	m6b	Created	-0.076000	-0.130000	-0.040000
hsa-miR-3156-3p	atggtttacGTGGGAaaat	4	CUCCCACU	m6b	Created	-0.323000	-0.383000	No effect
hsa-miR-4495	atggTTTACATgggaaaat	1	AAUGUAAA	m7b	Disrupted	0.214000	0.047000	No effect
hsa-miR-662	atggtttACGTGGGAaaat	0	UCCCACGU	m8a	Created	no TS	-0.255000	No effect
hsa-miR-1260a	atggtttacGTGGGAaaat	0	AUCCCACC	m6b	Created	-0.179	-0.237	No effect
hsa-miR-1260b	atggtttacGTGGGAaaat	0	AUCCCACC	m6b	Created	-0.179	-0.237	-0.01
hsa-miR-188-3p	atggtttacGTGGGAaaat	0	CUCCCACA	m6b	Created	-0.076	-0.13	-0.04
hsa-miR-3156-3p	atggtttacGTGGGAaaat	0	CUCCCACU	m6b	Created	-0.323	-0.383	No effect
hsa-miR-4495	atggTTTACATgggaaaat	1	AAUGUAAA	m7b	Disrupted	0.214	0.047	No effect
hsa-miR-662	atggtttACGTGGGAaaat	0	UCCCACGU	m8a	Created	no TS	-0.255	No effect

Mutation			Mutation ID		Sample Name		Cancer Type
chr15:g.71782086G>C			COSN8477407		AOCS-092-3-3		[ovary][NS][other][neoplasm]
miRNA Targets Table
miR ID	miRSite	Conservation	miRSeed	SeedClass	FuncClass	Wildtype CS+	Mutant CS+	PITA score change
hsa-miR-139-3p	cctgcccaGCGTCTCtcac	0	GGAGACGC	m7b	Created	no TS	-0.047000	-3.650000
hsa-miR-3187-5p	ccTGCCCAGGgtctctcac	3	CCUGGGCA	m8a	(m8a->m7a)	-0.075000	-0.075000	-0.030000
hsa-miR-4292	cctgCCCAGGGtctctcac	4	CCCCUGGG	m7b	Disrupted	-0.244000	-0.246000	-0.220000
hsa-miR-4725-5p	cctgccCAGGGTCTctcac	6	AGACCCUG	m8a	Disrupted	-0.050000	-0.082000	0.050000
hsa-miR-504	cctgccCAGGGTCTctcac	6	AGACCCUG	m8a	Disrupted	-0.022000	-0.035000	No effect
hsa-miR-612	ccTGCCCAGCgtctctcac	3	GCUGGGCA	m8a	(m7a->m8a)	-0.097000	-0.097000	-0.010000

Mutation			Mutation ID		Sample Name		Cancer Type
chr15:g.71782579C>T			COSN8815780		SS6003115		[oesophagus][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID	miRSite	Conservation	miRSeed	SeedClass	FuncClass	Wildtype CS+	Mutant CS+	PITA score change
hsa-miR-1257	atatgcgATTCACatttgt	0	AGUGAAUG	m6b	Created	no TS	-0.011000	No effect
hsa-miR-3691-5p	atatgcgATCCACatttgt	2	AGUGGAUG	m6b	Disrupted	-0.324000	-0.254000	No effect
hsa-miR-4491	atatgcgaTCCACATTtgt	7	AAUGUGGA	m8a	Disrupted	-0.218000	-0.089000	No effect
hsa-miR-4657	atatgcgaTCCACATTtgt	7	AAUGUGGA	m8a	Disrupted	-0.188000	-0.078000	No effect
hsa-miR-4752	atatgcgATCCACAtttgt	2	UUGUGGAU	m7b	Disrupted	-0.232000	-0.137000	0.180000

Mutation			Mutation ID		Sample Name		Cancer Type
chr15:g.71782580C>T			COSN8815781		SS6003115		[oesophagus][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID	miRSite	Conservation	miRSeed	SeedClass	FuncClass	Wildtype CS+	Mutant CS+	PITA score change
hsa-miR-3668	tatgcgaTCTACATTtgtg	0	AAUGUAGA	m8a	Created	no TS	-0.083000	No effect
hsa-miR-3691-5p	tatgcgATCCACatttgtg	2	AGUGGAUG	m6b	Disrupted	-0.324000	-0.254000	No effect
hsa-miR-4491	tatgcgaTCCACATTtgtg	7	AAUGUGGA	m8a	Disrupted	-0.218000	-0.089000	No effect
hsa-miR-4657	tatgcgaTCCACATTtgtg	7	AAUGUGGA	m8a	Disrupted	-0.188000	-0.078000	No effect
hsa-miR-4752	tatgcgATCCACAtttgtg	2	UUGUGGAU	m7b	Disrupted	-0.232000	-0.137000	0.060000

Mutation			Mutation ID		Sample Name		Cancer Type
chr15:g.71782907G>A			COSN1683736		RK075_C01		[liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID	miRSite	Conservation	miRSeed	SeedClass	FuncClass	Wildtype CS+	Mutant CS+	PITA score change

Mutation			Mutation ID		Sample Name		Cancer Type
chr15:g.71783141C>T			COSN5756351		HX19T		[liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID	miRSite	Conservation	miRSeed	SeedClass	FuncClass	Wildtype CS+	Mutant CS+	PITA score change
hsa-miR-2054	aaatTATTACAtaagcagg	1	CUGUAAUA	m7b	Disrupted	-0.172000	no TS	0.440000
hsa-miR-369-3p	aaatTATTATataagcagg	4	AAUAAUAC	m6b	Created	0.177000	0.194000	-0.170000
hsa-miR-374a-5p	aaatTATTATAtaagcagg	4	UUAUAAUA	m7b	Created	0.060000	-0.002000	-0.400000
hsa-miR-374b-5p	aaatTATTATATaagcagg	4	AUAUAAUA	m8a	Created	0.070000	0.008000	-0.300000
hsa-miR-379-3p	aaattaTTACATAagcagg	1	UAUGUAAC	m7a	Disrupted	-0.017000	0.024000	0.010000
hsa-miR-380-3p	aaattATTACATAagcagg	1	UAUGUAAU	m8a	Disrupted	-0.154000	0.029000	0.340000
hsa-miR-3924	aaattatTACATAagcagg	1	AUAUGUAU	m6b	Disrupted	-0.028000	no TS	3.310000
hsa-miR-410	aaattaTTATATaagcagg	0	AAUAUAAC	m6b	Created	no TS	0.029000	-0.480000
hsa-miR-411-3p	aaattaTTACATAagcagg	1	UAUGUAAC	m7a	Disrupted	-0.017000	0.024000	-0.060000
hsa-miR-4495	aaattaTTACATaagcagg	1	AAUGUAAA	m6b	Disrupted	0.214000	0.234000	No effect
hsa-miR-5692b	aaatTATTATataagcagg	4	AAUAAUAU	m6b	Created	0.142000	0.160000	-0.400000
hsa-miR-5692c	aaatTATTATataagcagg	4	AAUAAUAU	m6b	Created	0.142000	0.160000	-0.220000

**Germline mutations in target sites of miRNAs in somatic mutation table**
Location	SNP ID	Ancestral Allele	Allele	miR ID	Conservation	miRSite	FuncClass	Validation	context+ score change
71777411	rs200730384	C	C	hsa-miR-2682-5p hsa-miR-34a-5p hsa-miR-34b-5p hsa-miR-34c-5p hsa-miR-3714 hsa-miR-449a hsa-miR-449b-5p hsa-miR-449c-5p hsa-miR-4747-5p hsa-miR-5196-5p hsa-miR-605-3p	1 1 1 1 3 1 1 1 1 1 1	tcACTGCCTtccc tCACTGCCttccc tcACTGCCTtccc tCACTGCCttccc tcaCTGCCTTccc tCACTGCCttccc tCACTGCCttccc tcACTGCCTtccc tcactgCCTTCCC tcactgCCTTCCC tcacTGCCTTCcc	Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted	N N N N N N N N N N N	-0.124 -0.225 -0.115 -0.206 -0.124 -0.197 -0.197 -0.162 -0.095 -0.095 -0.087
71777411	rs200730384	C	T	hsa-miR-7-5p	1	tcactGTCTTCCc	Created	N	-0.156
71777736	rs78526880	G	G	hsa-miR-211-3p hsa-miR-5090 hsa-miR-6775-5p hsa-miR-92b-5p	4 2 2 3	tgccccGTCCCTG TGCCCCGtccctg TGCCCCGtccctg tgccCCGTCCCtg	Disrupted Disrupted Disrupted Disrupted	N N N N	-0.088 -0.223 -0.223 -0.226
71777736	rs78526880	G	A	hsa-miR-3675-5p hsa-miR-486-3p hsa-miR-6757-5p	2 2 5	tGCCCCATccctg TGCCCCAtccctg tgcccCATCCCTg	Created Created Created	N N N	-0.18 -0.201 -0.074
71777793	rs140846238	T	C	hsa-miR-1237-5p hsa-miR-4488 hsa-miR-4697-5p hsa-miR-6882-3p	0	aggcagCGCCCCC aggcagCGCCCCC aggcagCGCCCCC AGGCAGCgccccc	Created Created Created Created	N N N N	-0.213 -0.227 -0.213 -0.084
71777793	rs140846238	T	T	hsa-miR-6890-3p	1	aGGCAGTGccccc	Disrupted	N	-0.085
71778248	rs150081647	C	C	hsa-miR-4484 hsa-miR-548an hsa-miR-6768-3p	10 10 10	gtcaaGCCTTTAt gtcaaGCCTTTAt gtcaaGCCTTTAt	Disrupted Disrupted Disrupted	N N N	-0.033 0.009 -0.001
71778248	rs150081647	C	A	hsa-miR-1264 hsa-miR-142-5p hsa-miR-5590-3p hsa-miR-6507-3p	5 5 10 10	gtcAAGACTTtat gtcaagACTTTAT gtcaagACTTTAT gtcaaGACTTTAt	Created Created Created Created	N N N N	0.029 0.15 0.141 0.045
71778562	rs36015014	-	-	hsa-miR-3925-3p hsa-miR-665 hsa-miR-766-3p hsa-miR-873-5p	1 0 1 0	cgttcCTGGAGAg cgtTCCTGGAgag cgttcCTGGAGAg cGTTCCTGgagag	Unknown Unknown Unknown Unknown	N N N N	0.02 0.039 0.038 -0.016
71778562	rs36015014	-	G	hsa-miR-150-5p hsa-miR-1915-3p hsa-miR-2116-3p hsa-miR-4713-5p hsa-miR-4726-3p hsa-miR-532-3p hsa-miR-6764-5p hsa-miR-6840-3p	7 1 7 7 1 7 1 0	cgttccTGGGAGAg cgttCCTGGGAgag cgttccTGGGAGAg cgttccTGGGAGAg cgttCCTGGGAgag cgttccTGGGAGAg cgttCCTGGGAgag cgtTCCTGGGAgag	Unknown Unknown Unknown Unknown Unknown Unknown Unknown Unknown	N N N N N N N N	0.032 No Change 0.014 0.059 -0.01 0.022 -0.007 -0.077
71779330	rs149421451	G	G	hsa-miR-1291 hsa-miR-345-3p hsa-miR-6775-3p hsa-miR-7976	2 2 2 2	tgttCAGGGCCtg tgTTCAGGGcctg tgttCAGGGCCtg tgtTCAGGGCctg	Disrupted Disrupted Disrupted Disrupted	N N N N	-0.101 0.068 -0.082 -0.011
71779330	rs149421451	G
71780158	rs1054259	T	C	hsa-miR-4716-3p hsa-miR-625-5p hsa-miR-6794-5p	1 0 1	tTCCCCCTctcct TTCCCCCtctcct tTCCCCCTctcct	Created Created Created	N N N	-0.104 -0.063 -0.123
71780158	rs1054259	T	T	hsa-miR-3154 hsa-miR-3179 hsa-miR-4434 hsa-miR-4516 hsa-miR-5703 hsa-miR-6770-5p hsa-miR-6783-5p	2 1 2 2 2 2 0	ttcCCCTTCTcct ttCCCCTTCtcct ttcccCTTCTCCt ttcccCTTCTCCt ttcccCTTCTCCt ttccCCTTCTCct TTCCCCTtctcct	Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted	N N N N N N N	-0.001 -0.087 0.047 0.047 0.009 0.058 -0.044
71780848	rs35209544	-	-	hsa-miR-204-5p hsa-miR-211-5p hsa-miR-6832-3p	2 2 2	ttacAAAGGGAca ttacAAAGGGAca ttacAAAGGGAca	Unknown Unknown Unknown	N N N	0.061 0.061 0.044
71780848	rs35209544	-	G	hsa-miR-3127-3p hsa-miR-6756-3p	2 2	ttacaAAGGGGAca ttacaAAGGGGAca	Unknown Unknown	N N	-0.017 -0.003
71780850	rs17811309	G	G	hsa-miR-204-5p hsa-miR-211-5p hsa-miR-6832-3p	2 2 2	acAAAGGGAcaga acAAAGGGAcaga acAAAGGGAcaga	Disrupted Disrupted Disrupted	N N N	0.061 0.061 0.044
71780850	rs17811309	G	A	hsa-miR-130b-5p hsa-miR-3120-5p hsa-miR-4753-3p hsa-miR-593-3p hsa-miR-6818-3p hsa-miR-6844 hsa-miR-6888-3p hsa-miR-6895-3p	2 5 2 2 2 2 7 2	acAAAGAGAcaga acaaagAGACAGA acAAAGAGAcaga acaaAGAGACAga acaaAGAGACAga ACAAAGAgacaga acaaagAGACAGA acaaAGAGACAga	Created Created Created Created Created Created Created Created	N N N N N N N N	0.099 0.014 0.113 0.028 -0.009 0.053 -0.02 0.017
71781232	rs4776575	G	G	hsa-miR-125a-5p hsa-miR-125b-5p hsa-miR-345-3p hsa-miR-4287 hsa-miR-4319 hsa-miR-4469 hsa-miR-4685-3p hsa-miR-4732-3p hsa-miR-670-5p hsa-miR-6867-3p hsa-miR-7113-3p	3 3 3 2 3 2 2 3 3 2 2	gaTCAGGGAgact gaTCAGGGAgact gaTCAGGGAgact gatcAGGGAGAct gaTCAGGGAgact gatcAGGGAGAct gatcAGGGAGAct gaTCAGGGAgact gaTCAGGGAgact gatcAGGGAGAct gatCAGGGAGAct	Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted	N N N N N N N N N N N	-0.014 No Change -0.01 -0.013 -0.004 -0.008 -0.02 -0.014 -0.044 -0.006 -0.084
71781232	rs4776575	G	A	hsa-miR-146a-3p hsa-miR-301a-5p hsa-miR-3151-3p hsa-miR-3192-3p hsa-miR-3921 hsa-miR-4653-5p hsa-miR-6817-3p hsa-miR-6873-3p hsa-miR-6895-3p hsa-miR-7110-3p	3 3 3 3 3 3 2 2 2 2	gaTCAGAGAgact gaTCAGAGAgact GATCAGAgagact GATCAGAgagact gaTCAGAGAgact gaTCAGAGAgact gatCAGAGAGAct gatcAGAGAGAct gatcaGAGAGACt gatcAGAGAGAct	Created Created Created Created Created Created Created Created Created Created	N N N N N N N N N N	0.045 0.03 0.01 -0.007 0.047 0.047 -0.031 0.007 -0.077 0.022
71782249	rs35056281	-	-	hsa-miR-6884-3p hsa-miR-6887-3p	1 1	aaTGATGGAgggg aatgatGGAGGGG	Unknown Unknown	N N	0.029 -0.046
71782249	rs35056281	-	G	hsa-miR-2116-3p	1	aatgATGGGAGggg	Unknown	N	0.052
71782253	rs200298240	-	-	hsa-miR-6887-3p	1	atGGAGGGGgggg	Unknown	N	-0.093
71782253	rs200298240	-	T	hsa-miR-1224-3p hsa-miR-1306-5p	1 1	atggAGGTGGGggg atGGAGGTGggggg	Unknown Unknown	N N	0.004 -0.058
71782617	rs79206740	C	C	hsa-miR-4459 hsa-miR-4505 hsa-miR-4695-5p hsa-miR-485-5p hsa-miR-5589-5p hsa-miR-5787 hsa-miR-6884-5p	2 2 2 2 6 2 2	acccagCCTCCTG aCCCAGCCtcctg acccaGCCTCCTg accCAGCCTCctg ACCCAGCctcctg aCCCAGCCtcctg accCAGCCTCctg	Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted	N N N N N N N	-0.075 -0.176 -0.147 -0.091 -0.147 -0.176 -0.091
71782617	rs79206740	C	T	hsa-miR-4463 hsa-miR-4768-3p hsa-miR-873-3p	2 2 2	acCCAGTCTcctg acccagTCTCCTG accCAGTCTCctg	Created Created Created	N N N	-0.068 -0.047 -0.069
71782775	rs140605066	T	T	hsa-miR-3908 hsa-miR-3942-5p hsa-miR-4703-5p hsa-miR-4766-3p	3 3 3 3	cctgATTGCTAct cctgATTGCTAct cctgATTGCTAct cctgATTGCTAct	Disrupted Disrupted Disrupted Disrupted	N N N N	-0.044 -0.041 -0.048 -0.061
71782775	rs140605066	T

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Somatic mutations that impact miRNA target sites

Germline mutations in target sites of miRNAs in somatic mutation table

Genome Browser