| SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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| RefSeq ID: | NM_004245 |
|---|---|
| Gene Symbol: | TGM5 |
| Description: | Homo sapiens transglutaminase 5 (TGM5), transcript variant 2, mRNA. |
| Gene Location: | chr15(-):43524792-43559055 |
| Browse Associations | |
| Mutation | Mutation ID | Sample Name | Cancer Type | |||||
|---|---|---|---|---|---|---|---|---|
| chr15:g.43232675A>G | COSN8173519 | PCSI_0083_Pa_P_526 | [pancreas][NS][carcinoma][NS] | |||||
| miRNA Targets Table | ||||||||
| miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
| hsa-miR-4421 |
gaaagaaaaAGACAGGctg |
2 |
ACCUGUCU | m7b | (m7b->m6b) | -0.213000 | no TS | No effect |
| hsa-miR-511 |
gaaagaaAAAGACAggctg |
1 |
GUGUCUUU | m7b | Disrupted | -0.099000 | no TS |
0.370000 |
| hsa-miR-5699 |
gaaagaaaaAGACAGGctg |
2 |
UCCUGUCU | m7b | (m7b->m6b) | -0.241000 | no TS |
0.020000 |
| Mutation | Mutation ID | Sample Name | Cancer Type | |||||
|---|---|---|---|---|---|---|---|---|
| chr15:g.43232970G>A | COSN8744347 | AOCS-153-1-2 | [ovary][NS][other][neoplasm] | |||||
| miRNA Targets Table | ||||||||
| miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
| hsa-miR-2052 |
ctatacTCAAAACcatttc |
0 | UGUUUUGA | m7b | Created | no TS | -0.079000 |
-1.170000 |
| hsa-miR-218-2-3p |
ctatactcaGAACCATttc |
2 |
CAUGGUUC | m7b | (m7b->m6b) | -0.189000 | no TS |
4.890000 |
| hsa-miR-4682 |
ctatACTCAGAaccatttc |
2 |
UCUGAGUU | m7a | Disrupted | -0.109000 | no TS |
0.080000 |