SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
||||||||
Home | Search | Help | Download |
RefSeq ID: | NM_001127208 |
---|---|
Gene Symbol: | TET2 |
Description: | Homo sapiens tet methylcytosine dioxygenase 2 (TET2), transcript variant 1, mRNA. |
Gene Location: | chr4(+):106067841-106200960 |
Browse Associations |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr4:g.105276602->G | ICGC_sm462998 | RK126_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-1273g-3p |
gtggGCAGTGGggaaaggt |
10 |
ACCACUGC | m7b | Disrupted | -0.158000 | -0.145000 | No effect | |
hsa-miR-2355-5p |
gtgggcagTGGGGAaaggt |
0 | AUCCCCAG | m6b | Disrupted | -0.298000 | -0.152000 |
0.020000 |
|
hsa-miR-361-3p |
gtgggcagTGGGGGAaaggt |
0 | UCCCCCAG | m7a | Created | no TS | -0.189000 | No effect | |
hsa-miR-3679-3p |
gtgggcagtGGGGGAAaggt |
0 | CUUCCCCC | m7b | (m6c->m7b) | -0.123000 | -0.409000 |
-0.390000 |
|
hsa-miR-4286 |
gtgggcAGTGGGGaaaggt |
7 |
ACCCCACU | m7b | Disrupted | -0.580000 | -0.380000 |
0.030000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr4:g.105277680C>G | COSN5050310 | HX19T | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-1273f |
ggtgctCATCTCacatgct |
12 |
GGAGAUGG | m6b | Disrupted | 0.032000 | no TS |
3.780000 |
|
hsa-miR-143-3p |
ggtgcTCATCTCAcatgct |
12 |
UGAGAUGA | m8a | Disrupted | -0.009000 | no TS |
4.380000 |
|
hsa-miR-4501 |
ggtgctcatGTCACATgct |
0 | UAUGUGAC | m7b | (m6c->m7b) | no TS | -0.048000 |
0.460000 |
|
hsa-miR-4708-5p |
ggtgctCATCTCacatgct |
12 |
AGAGAUGC | m6b | Disrupted | 0.027000 | no TS |
0.190000 |
|
hsa-miR-4770 |
ggtgcTCATCTCAcatgct |
12 |
UGAGAUGA | m8a | Disrupted | 0.002000 | no TS |
1.170000 |
|
hsa-miR-489 |
ggtgctcATGTCACatgct |
0 | GUGACAUC | m7a | Created | NA | NA | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr4:g.105278293A>T | COSN9583231 | AOCS-166-1-2 | [ovary][NS][other][neoplasm] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-371a-5p |
aaatGTTTGAGTgatgttc |
3 |
ACUCAAAC | m8a | Disrupted | -0.025000 | -0.052000 | No effect | |
hsa-miR-377-3p |
aaatgttTGTGTGATgttc |
0 | AUCACACA | m8a | Created | no TS | -0.028000 |
-0.040000 |
|
hsa-miR-4731-3p |
aaatgtTTGTGTGatgttc |
0 | CACACAAG | m7a | Created | -0.185000 | -0.185000 |
-0.030000 |
|
hsa-miR-888-5p |
aaatgTTTGAGTgatgttc |
14 |
UACUCAAA | m7b | Disrupted | 0.073000 | no TS |
0.060000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr4:g.105278502T>C | COSN1977959 | RK071_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-1587 |
tatttCAGCCCAtgctctc |
0 | UUGGGCUG | m7b | Created | no TS | -0.090000 |
-0.020000 |
|
hsa-miR-3160-3p |
tattTCAGCTCatgctctc |
17 |
AGAGCUGA | m7b | Disrupted | -0.424000 | -0.307000 | No effect | |
hsa-miR-4487 |
tatttCAGCTCatgctctc |
17 |
AGAGCUGG | m6b | Disrupted | -0.127000 | -0.112000 |
0.160000 |
|
hsa-miR-4492 |
tatttCAGCCCatgctctc |
0 | GGGGCUGG | m6b | Created | no TS | -0.052000 |
-0.010000 |
|
hsa-miR-4656 |
tattTCAGCCCAtgctctc |
0 | UGGGCUGA | m8a | Created | no TS | -0.168000 |
-0.290000 |
|
hsa-miR-4675 |
tatttCAGCCCatgctctc |
0 | GGGGCUGU | m6b | Created | no TS | -0.071000 | No effect | |
hsa-miR-4741 |
tatttCAGCCCatgctctc |
0 | CGGGCUGU | m6b | Created | no TS | -0.057000 |
-11.030000 |
|
hsa-miR-5001-5p |
tatttCAGCCCatgctctc |
0 | AGGGCUGG | m6b | Created | no TS | -0.048000 |
-0.040000 |
|
hsa-miR-556-5p |
tatttcAGCTCATgctctc |
13 |
GAUGAGCU | m7b | Disrupted | -0.008000 | no TS | No effect | |
hsa-miR-762 |
tatttCAGCCCatgctctc |
0 | GGGGCUGG | m6b | Created | no TS | -0.048000 |
-0.010000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr4:g.105278867A>G | COSN9583232 | AOCS-094-1-1 | [ovary][NS][other][neoplasm] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-4276 |
aaTCACTGAGggtacatac |
20 |
CUCAGUGA | m8a | (m7a->m8a) | -0.218000 | -0.144000 |
0.190000 |
|
hsa-miR-4724-3p |
aatcactGAAGGTACatac |
0 | GUACCUUC | m8a | Disrupted | -0.097000 | no TS |
0.950000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr4:g.105279146->T | cosmic_v64_1870281 | NA | [upper_aerodigestive_tract][mouth][carcinoma][squamous_cell_carcinoma] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-let-7a-3p |
aatgttttTTGTATAccat |
0 | CUAUACAA | m7b | Disrupted | 0.171000 | 0.168000 | No effect | |
hsa-let-7b-3p |
aatgttttTTGTATAccat |
0 | CUAUACAA | m7b | Disrupted | 0.188000 | 0.185000 | No effect | |
hsa-let-7f-1-3p |
aatgttttTTGTATAccat |
0 | CUAUACAA | m7b | Disrupted | 0.169000 | 0.176000 | No effect | |
hsa-miR-3613-3p |
aatgTTTTTTGTataccat |
1 |
ACAAAAAA | m8a | Disrupted | 0.315000 | 0.293000 | No effect | |
hsa-miR-4666a-3p |
aatgttttTTGTATaccat |
0 | CAUACAAU | m6b | Disrupted | 0.225000 | 0.223000 |
-0.070000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr4:g.105279293G>C | COSN7722330 | 8044719 | [pancreas][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
Location | SNP ID | Ancestral Allele |
Allele | miR ID | Conservation | miRSite | FuncClass | Validation | context+ score change |
---|---|---|---|---|---|---|---|---|---|
105278696 | rs181411622 | G | G |
hsa-miR-371a-5p |
3 |
ttaaaaGTTTGAG |
Disrupted |
N |
-0.052 |
C |
hsa-miR-3973 hsa-miR-520g-3p hsa-miR-520h hsa-miR-561-3p |
3 3 3 10 |
ttaaaACTTTGAg ttaaaACTTTGAg ttaaaACTTTGAg ttaAAACTTTgag |
Created Created Created Created |
N N N N |
0.037 0.042 0.042 0.041 |
|||
105279297 | rs35691576 | - | - |
hsa-miR-6793-3p |
2 |
gggGTTGGGGAga |
Unknown |
N |
-0.141 |
G |
hsa-miR-361-3p |
4 |
ggggtTGGGGGAga |
Unknown |
N |
-0.12 |
|||
105279528 | rs142097112 | T | T |
hsa-miR-203b-3p |
10 |
gtaCAGTTCActt |
Disrupted |
N |
-0.157 |
C |
hsa-miR-3160-3p hsa-miR-4487 hsa-miR-4718 hsa-miR-558 |
10 10 10 10 |
gtaCAGCTCActt gtaCAGCTCActt GTACAGCtcactt gtaCAGCTCActt |
Created Created Created Created |
N N N N |
-0.122 -0.114 -0.228 -0.13 |