SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database

Prediction criteria: TargetScan sites only     All 6mer or longer seed matches

RefSeq ID: NM_001127208
Gene Symbol: TET2
Description: Homo sapiens tet methylcytosine dioxygenase 2 (TET2), transcript variant 1, mRNA.
Gene Location: chr4(+):106067841-106200960
Browse Associations

Somatic mutations that impact miRNA target sites



Mutation Mutation ID Sample Name Cancer Type
chr4:g.105276602->G ICGC_sm462998 RK126_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-1273g-3p gtggGCAGTGGggaaaggt
10
ACCACUGC m7b Disrupted -0.158000 -0.145000 No effect
hsa-miR-2355-5p gtgggcagTGGGGAaaggt
0 AUCCCCAG m6b Disrupted -0.298000 -0.152000 0.020000
hsa-miR-361-3p gtgggcagTGGGGGAaaggt
0 UCCCCCAG m7a Created no TS -0.189000 No effect
hsa-miR-3679-3p gtgggcagtGGGGGAAaggt
0 CUUCCCCC m7b (m6c->m7b) -0.123000 -0.409000 -0.390000
hsa-miR-4286 gtgggcAGTGGGGaaaggt
7
ACCCCACU m7b Disrupted -0.580000 -0.380000 0.030000

Mutation Mutation ID Sample Name Cancer Type
chr4:g.105277680C>G COSN5050310 HX19T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-1273f ggtgctCATCTCacatgct
12
GGAGAUGG m6b Disrupted 0.032000 no TS 3.780000
hsa-miR-143-3p ggtgcTCATCTCAcatgct
12
UGAGAUGA m8a Disrupted -0.009000 no TS 4.380000
hsa-miR-4501 ggtgctcatGTCACATgct
0 UAUGUGAC m7b (m6c->m7b) no TS -0.048000 0.460000
hsa-miR-4708-5p ggtgctCATCTCacatgct
12
AGAGAUGC m6b Disrupted 0.027000 no TS 0.190000
hsa-miR-4770 ggtgcTCATCTCAcatgct
12
UGAGAUGA m8a Disrupted 0.002000 no TS 1.170000
hsa-miR-489 ggtgctcATGTCACatgct
0 GUGACAUC m7a Created NA NA No effect

Mutation Mutation ID Sample Name Cancer Type
chr4:g.105278293A>T COSN9583231 AOCS-166-1-2 [ovary][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-371a-5p aaatGTTTGAGTgatgttc
3
ACUCAAAC m8a Disrupted -0.025000 -0.052000 No effect
hsa-miR-377-3p aaatgttTGTGTGATgttc
0 AUCACACA m8a Created no TS -0.028000 -0.040000
hsa-miR-4731-3p aaatgtTTGTGTGatgttc
0 CACACAAG m7a Created -0.185000 -0.185000 -0.030000
hsa-miR-888-5p aaatgTTTGAGTgatgttc
14
UACUCAAA m7b Disrupted 0.073000 no TS 0.060000

Mutation Mutation ID Sample Name Cancer Type
chr4:g.105278502T>C COSN1977959 RK071_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-1587 tatttCAGCCCAtgctctc
0 UUGGGCUG m7b Created no TS -0.090000 -0.020000
hsa-miR-3160-3p tattTCAGCTCatgctctc
17
AGAGCUGA m7b Disrupted -0.424000 -0.307000 No effect
hsa-miR-4487 tatttCAGCTCatgctctc
17
AGAGCUGG m6b Disrupted -0.127000 -0.112000 0.160000
hsa-miR-4492 tatttCAGCCCatgctctc
0 GGGGCUGG m6b Created no TS -0.052000 -0.010000
hsa-miR-4656 tattTCAGCCCAtgctctc
0 UGGGCUGA m8a Created no TS -0.168000 -0.290000
hsa-miR-4675 tatttCAGCCCatgctctc
0 GGGGCUGU m6b Created no TS -0.071000 No effect
hsa-miR-4741 tatttCAGCCCatgctctc
0 CGGGCUGU m6b Created no TS -0.057000 -11.030000
hsa-miR-5001-5p tatttCAGCCCatgctctc
0 AGGGCUGG m6b Created no TS -0.048000 -0.040000
hsa-miR-556-5p tatttcAGCTCATgctctc
13
GAUGAGCU m7b Disrupted -0.008000 no TS No effect
hsa-miR-762 tatttCAGCCCatgctctc
0 GGGGCUGG m6b Created no TS -0.048000 -0.010000

Mutation Mutation ID Sample Name Cancer Type
chr4:g.105278867A>G COSN9583232 AOCS-094-1-1 [ovary][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-4276 aaTCACTGAGggtacatac
20
CUCAGUGA m8a (m7a->m8a) -0.218000 -0.144000 0.190000
hsa-miR-4724-3p aatcactGAAGGTACatac
0 GUACCUUC m8a Disrupted -0.097000 no TS 0.950000

Mutation Mutation ID Sample Name Cancer Type
chr4:g.105279146->T cosmic_v64_1870281 NA [upper_aerodigestive_tract][mouth][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-let-7a-3p aatgttttTTGTATAccat
0 CUAUACAA m7b Disrupted 0.171000 0.168000 No effect
hsa-let-7b-3p aatgttttTTGTATAccat
0 CUAUACAA m7b Disrupted 0.188000 0.185000 No effect
hsa-let-7f-1-3p aatgttttTTGTATAccat
0 CUAUACAA m7b Disrupted 0.169000 0.176000 No effect
hsa-miR-3613-3p aatgTTTTTTGTataccat
1
ACAAAAAA m8a Disrupted 0.315000 0.293000 No effect
hsa-miR-4666a-3p aatgttttTTGTATaccat
0 CAUACAAU m6b Disrupted 0.225000 0.223000 -0.070000

Mutation Mutation ID Sample Name Cancer Type
chr4:g.105279293G>C COSN7722330 8044719 [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change

No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



Germline mutations in target sites of miRNAs in somatic mutation table

Location SNP ID Ancestral
Allele
Allele miR ID Conservation miRSite FuncClass Validation context+
score change
105278696 rs181411622 G G hsa-miR-371a-5p
3
ttaaaaGTTTGAG
Disrupted
N
-0.052
C hsa-miR-3973
hsa-miR-520g-3p
hsa-miR-520h
hsa-miR-561-3p
3
3
3
10
ttaaaACTTTGAg
ttaaaACTTTGAg
ttaaaACTTTGAg
ttaAAACTTTgag
Created
Created
Created
Created
N
N
N
N
0.037
0.042
0.042
0.041
105279297 rs35691576 - - hsa-miR-6793-3p
2
gggGTTGGGGAga
Unknown
N
-0.141
G hsa-miR-361-3p
4
ggggtTGGGGGAga
Unknown
N
-0.12
105279528 rs142097112 T T hsa-miR-203b-3p
10
gtaCAGTTCActt
Disrupted
N
-0.157
C hsa-miR-3160-3p
hsa-miR-4487
hsa-miR-4718
hsa-miR-558
10
10
10
10
gtaCAGCTCActt
gtaCAGCTCActt
GTACAGCtcactt
gtaCAGCTCActt
Created
Created
Created
Created
N
N
N
N
-0.122
-0.114
-0.228
-0.13

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