SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
  Home Search Help Download  

PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
RefSeq ID: NM_001193376
Gene Symbol: TERT
Description: Homo sapiens telomerase reverse transcriptase (TERT), transcript variant 2, mRNA.
Gene Location: chr5(-):1253286-1295162
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr5:g.1253257C>T COSN1306528 HCC52T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-1909-3p aggaCCCTGCacctggatg
 1
 CGCAGGGG m6b Disrupted -0.122000 no TS 0.010000
hsa-miR-764 aggaccctGCACCTGgatg
 2
 GCAGGUGC m7b Disrupted -0.195000 no TS 1.310000
hsa-miR-1909-3p aggaCCCTGCacctggatg
 0 CGCAGGGG m6b Disrupted -0.122 no TS 0.01
hsa-miR-764 aggaccctGCACCTGgatg
 0 GCAGGUGC m7b Disrupted -0.195 no TS 1.31


Mutation Mutation ID Sample Name Cancer Type
chr5:g.1253387G>A COSN15076451 SM-4B296 [oesophagus][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr5:g.1253648G>A COSN9403550 AOCS-120-3-6 [ovary][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-4268 ggaggGAGGAGCggcccac
 0 GGCUCCUC m7b Created no TS -0.096000 -0.160000
hsa-miR-4632 ggagggagGGGCGGCccac
 0 UGCCGCCC m7b Disrupted -0.263000 no TS 16.430000
hsa-miR-4749-3p ggaggGAGGGGCGgcccac
 0 CGCCCCUC m8a Disrupted -0.150000 no TS No effect

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



Genome Browser