SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_016524 |
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Gene Symbol: | SYT17 |
Description: | Homo sapiens synaptotagmin XVII (SYT17), mRNA. |
Gene Location: | chr16(+):19179637-19278554 |
Browse Associations |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr16:g.19267176G>A | COSN7300342 | 8057559 | [pancreas][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-4658 |
tacACACTCACaacatgtc |
0 | GUGAGUGU | m8a | Created | no TS | -0.164000 |
-1.560000 |
hsa-miR-4737 |
tacacaCTCGCAacatgtc |
0 | AUGCGAGG | m6b | Disrupted | -0.229000 | no TS |
13.110000 |
hsa-miR-4758-5p |
tacaCACTCACaacatgtc |
0 | GUGAGUGG | m7a | Created | NA | NA |
-1.600000 |
hsa-miR-574-5p |
taCACACTCAcaacatgtc |
4 |
UGAGUGUG | m8a | (m7a->m8a) | -0.241000 | -0.440000 |
-0.670000 |
Location | SNP ID | Ancestral Allele |
Allele | miR ID | Conservation | miRSite | FuncClass | Validation | context+ score change |
---|---|---|---|---|---|---|---|---|---|
19267175 | rs148182111 | C | C |
hsa-miR-4737 hsa-miR-574-5p |
1 4 |
cacaCTCGCAAca CACACTCgcaaca |
Disrupted Disrupted |
N N |
-0.229 -0.241 |
T |
hsa-miR-4684-3p hsa-miR-595 hsa-miR-6513-3p |
1 4 1 |
cacacTTGCAACA CACACTTgcaaca cACACTTGcaaca |
Created Created Created |
N N N |
-0.328 -0.225 -0.132 |