SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_177530 |
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Gene Symbol: | SULT1A1 |
Description: | Homo sapiens sulfotransferase family, cytosolic, 1A, phenol-preferring, member 1 (SULT1A1), transcript variant 1, mRNA. |
Gene Location: | chr16(-):28616915-28620649 |
Browse Associations | |
Browse Pathways |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
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chr16:g.28605807A>G | COSN6645156 | CHC205T | [liver][NS][carcinoma][hepatocellular_carcinoma] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-508-5p |
ggctcCTGGAGTcactgca |
1 |
UACUCCAG | m7b | Disrupted | 0.000000 | no TS | No effect |
hsa-miR-508-5p |
ggctcCTGGAGTcactgca |
1 |
UACUCCAG | m7b | Disrupted | 0.000000 | no TS | No effect |
Location | SNP ID | Ancestral Allele |
Allele | miR ID | Conservation | miRSite | FuncClass | Validation | context+ score change |
---|---|---|---|---|---|---|---|---|---|
28605807 | rs6839 | A | A |
hsa-miR-508-5p hsa-miR-665 |
1 1 |
tcCTGGAGTcact TCCTGGAgtcact |
Disrupted Disrupted |
N N |
No Change No Change |
G |
hsa-miR-6840-3p hsa-miR-6846-3p hsa-miR-6859-3p hsa-miR-7973 |
1 1 1 2 |
TCCTGGGgtcact tcctGGGGTCAct tcctGGGGTCAct tcctgGGGTCACt |
Created Created Created Created |
N N N N |
No Change No Change No Change No Change |