SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
RefSeq ID: NM_001169117
Gene Symbol: STIM2
Description: Homo sapiens stromal interaction molecule 2 (STIM2), transcript variant 3, mRNA.
Gene Location: chr4(+):26862312-27027003
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr4:g.27022865G>A ICGC_1323063 TCGA-D1-A17Q-01A-11D-A12J-09 UterineCorpusEndometrioidCarcinoma(TCGA,US)
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-367-5p gctggcaaCAACAGTaaac
 0 ACUGUUGC m7a Created NA NA 0.02
hsa-miR-452-5p gctggcaacAACAGTaaac
 0 AACUGUUU m6b Created -0.093 -0.133 -0.36
hsa-miR-4676-3p gctggcaacAACAGTaaac
 0 CACUGUUU m6b Created -0.103 -0.147 -0.01
hsa-miR-744-3p gctGGCAACAacagtaaac
 0 CUGUUGCC m7b (m6b->m7b) -0.052 -0.343 -0.16

Mutation Mutation ID Sample Name Cancer Type
chr4:g.27023240C>T ICGC_ssm_v3_27761 HCC102T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3607-3p gacagTTTACAGTcatttc
 0 ACUGUAAA m8a Disrupted -0.03 no TS 0.01
hsa-miR-625-3p gacagttTATAGTCatttc
 0 GACUAUAG m7a Created NA NA No effect
hsa-miR-943 gacagtttACAGTCAtttc
 0 CUGACUGU m7b Disrupted -0.193 no TS No effect

Mutation Mutation ID Sample Name Cancer Type
chr4:g.27024232G>A ICGC_sm272022 RK056_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-4714-3p taaattggTAGGTTGtata
 0 CCAACCUA m7b Created no TS -0.049 -0.06

Mutation Mutation ID Sample Name Cancer Type
chr4:g.27024900A>G ICGC_sm64512 RK019_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-518a-5p gaaCTTTGCAGttggatga
 0 CUGCAAAG m8a Disrupted -0.141 no TS 0.27
hsa-miR-527 gaaCTTTGCAGttggatga
 0 CUGCAAAG m8a Disrupted -0.141 no TS 0.27

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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