SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
RefSeq ID: NM_173499
Gene Symbol: SPATA8
Description: Homo sapiens spermatogenesis associated 8 (SPATA8), mRNA.
Gene Location: chr15(+):97326678-97328845
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr15:g.96785138C>G COSN8590676 4000_T [lung][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3127-5p tgtccctaCCCTGAagctc
 2
 AUCAGGGC m6b Disrupted -0.169000 no TS 7.700000

Mutation Mutation ID Sample Name Cancer Type
chr15:g.96785185G>A cosmic_v64_1838387 Melanoma
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-1343 cagCCCAGGAaactggtct
 0 CUCCUGGG m7b (m6b->m7b) no TS -0.394 No effect
hsa-miR-3074-5p cagccCAGGAAactggtct
 0 GUUCCUGC m6b Created no TS -0.075 No effect
hsa-miR-4292 cagCCCAGGGaactggtct
 1
 CCCCUGGG m7b (m7b->m6b) -0.448 no TS 2.12
hsa-miR-4308 cagcCCAGGGAactggtct
 1
 UCCCUGGA m7a Disrupted -0.178 no TS 0.01
hsa-miR-584-3p cagcccagGGAACTGgtct
 0 UCAGUUCC m7b Disrupted -0.13 no TS -1.29
hsa-miR-642b-5p cagcccAGGGAACtggtct
 1
 GGUUCCCU m7b Disrupted -0.139 no TS -1.38
hsa-miR-670 cagccCAGGGAactggtct
 1
 GUCCCUGA m6b Disrupted -0.135 no TS -3.34

Mutation Mutation ID Sample Name Cancer Type
chr15:g.96785220G>A cosmic_v64_1838360 Melanoma
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3934 tacCACCTGAaactcacct
 0 UCAGGUGU m7a (m6a->m7a) no TS -0.148 -0.05

Mutation Mutation ID Sample Name Cancer Type
chr15:g.96785235G>A cosmic_v64_1838364 Melanoma
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3157-3p acctggaaAGGGCAatcag
 0 CUGCCCUA m6b Disrupted -0.662 -0.484 No effect
hsa-miR-874 acctggaaAGGGCAatcag
 0 CUGCCCUG m6b Disrupted -0.344 -0.18 0.01
hsa-miR-938 acctggaAAGGGCAatcag
 2
 UGCCCUUA m7a Disrupted -0.172 no TS 8.18


Mutation Mutation ID Sample Name Cancer Type
chr15:g.96785241T>A COSN6078317 RK212_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



Mutation Mutation ID Sample Name Cancer Type
chr15:g.96785249C>T cosmic_v64_1838393 Melanoma
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr15:g.96785290C>T cosmic_v64_1838360 Melanoma
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3529-5p agtttctgtTCTACCagtg
 0 AGGUAGAC m6b Created no TS -0.114 -0.83
hsa-miR-4650-3p agtttctgTTCTACCagtg
 0 AGGUAGAA m7b Created no TS -0.249 -7.75
hsa-miR-4773 agtttCTGTTCTaccagtg
 0 CAGAACAG m7b Created no TS -0.238 -8.79

Mutation Mutation ID Sample Name Cancer Type
chr15:g.96785505A>C COSN7256243 8035603 [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-431-5p tataggGCAAGACActgtt
 7
 UGUCUUGC m8a Disrupted -0.315000 no TS 0.310000
hsa-miR-4711-3p tatagggcAAGACACtgtt
 9
 CGUGUCUU m7b Disrupted -0.120000 no TS 1.700000

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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