SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_001145819 |
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Gene Symbol: | SOX6 |
Description: | Homo sapiens SRY (sex determining region Y)-box 6 (SOX6), transcript variant 3, mRNA. |
Gene Location: | chr11(-):15987994-16424413 |
Browse Associations |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr11:g.15966583G>A | COSN4720228 | tumor_4177434 | [haematopoietic_and_lymphoid_tissue][NS][lymphoid_neoplasm][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-4639-3p |
ccccttagGAGAGTGtcta |
0 | UCACUCUC | m7b | Created | no TS | -0.170000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr11:g.15966674T>- | ICGC_ssm_v2_88532 | HX13T | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-3148 |
tttttTTTTTCCtttttgc |
0 | UGGAAAAA | m7b | Disrupted | -0.046000 | -0.042000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr11:g.15966982C>A | COSN5901944 | RK193_C01 | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-4693-3p |
tctttctcaCACTCTCctc |
13 |
UGAGAGUG | m7b | (m7b->m6b) | -0.167000 | no TS |
2.560000 |
hsa-miR-574-5p |
tctttctCACACTCtcctc |
12 |
UGAGUGUG | m7b | Disrupted | -0.324000 | -0.107000 | No effect |
hsa-miR-580 |
tctTTCTCAAactctcctc |
7 |
UUGAGAAU | m7a | (m6b->m7a) | 0.007000 | -0.024000 |
0.240000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr11:g.15967016A>C | COSN8740350 | AOCS-106-1-1 | [ovary][NS][other][neoplasm] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-4495 |
aagttTTTACATgacctta |
0 | AAUGUAAA | m7b | Created | no TS | -0.054000 | No effect |
hsa-miR-5696 |
aagttttTAAATGAcctta |
16 |
CUCAUUUA | m7b | Disrupted | 0.337000 | 0.340000 |
0.010000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr11:g.15967175T>C | COSN5258752 | HX28T | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-1271-3p |
taatgCAGGCACctacttg |
0 | AGUGCCUG | m7b | Created | no TS | -0.144000 |
-0.070000 |
hsa-miR-4763-5p |
taatGCAGGCacctacttg |
0 | CGCCUGCC | m6b | Created | no TS | -0.134000 | No effect |
hsa-miR-550a-3-5p |
taatgCAGGCACctacttg |
0 | AGUGCCUG | m7b | Created | no TS | -0.153000 |
-0.090000 |
hsa-miR-550a-5p |
taatgCAGGCACctacttg |
0 | AGUGCCUG | m7b | Created | no TS | -0.153000 |
-0.010000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr11:g.15967904G>A | COSN8534244 | tumor_4120193 | [haematopoietic_and_lymphoid_tissue][NS][lymphoid_neoplasm][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr11:g.15968097T>C | COSN6406514 | HX20T | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-1207-5p |
gtctgttatCCCTGCCAat |
2 |
UGGCAGGG | m8a | (m7a->m8a) | -0.089000 | -0.211000 |
-2.290000 |
hsa-miR-4722-5p |
gtctgttatTCCTGCCaat |
0 | GGCAGGAG | m7a | (m7a->m6a) | NA | NA |
0.010000 |
hsa-miR-4763-3p |
gtctgttatCCCTGCCaat |
2 |
AGGCAGGG | m7b | (m6b->m7b) | -0.096000 | -0.197000 |
-0.120000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr11:g.15968212T>A | COSN1129731 | HX13T | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-126-5p |
ttctcaaagAATAATaata |
0 | CAUUAUUA | m6b | Created | 0.362000 | 0.514000 | No effect |
hsa-miR-4795-3p |
ttctcaaagAATAATAata |
0 | AUAUUAUU | m7b | (m6b->m7b) | 0.373000 | 0.516000 | No effect |
hsa-miR-126-5p |
ttctcaaagAATAATaata |
0 | CAUUAUUA | m6b | Created | 0.362 | 0.514 | No effect |
hsa-miR-4795-3p |
ttctcaaagAATAATAata |
0 | AUAUUAUU | m7b | (m6b->m7b) | 0.373 | 0.516 |
-4.27 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr11:g.15968257C>G | COSN8941384 | SS6003320 | [oesophagus][NS][carcinoma][adenocarcinoma] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-3177-5p |
tttTGTACACgtttgtcta |
7 |
UGUGUACA | m7b | (m7b->m6c) | -0.043000 | no TS |
0.100000 |
hsa-miR-486-5p |
ttttGTACAGGtttgtcta |
1 |
UCCUGUAC | m7b | Created | -0.154000 | -0.243000 |
-0.010000 |
hsa-miR-649 |
ttttgtACAGGTTTgtcta |
19 |
AAACCUGU | m8a | Created | -0.083000 | -0.115000 |
-0.290000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr11:g.15969324T>G | COSN5300418 | RK085_C01 | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-3074-5p |
caagaaGCAGGAAtgccac |
1 |
GUUCCUGC | m7b | Created | 0.083000 | 0.074000 |
-0.010000 |
hsa-miR-370 |
caagaAGCAGGaatgccac |
0 | GCCUGCUG | m6b | Created | no TS | 0.001000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr11:g.15970460C>T | COSN8641253 | 4400_T | [lung][NS][carcinoma][squamous_cell_carcinoma] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-3925-5p |
ttgcttttGTTCTCTctca |
11 |
AAGAGAAC | m7b | Created | -0.025000 | -0.045000 |
-4.520000 |
hsa-miR-548aj-5p |
ttgCTTTTGCtctctctca |
13 |
UGCAAAAG | m7b | (m7b->m6c) | 0.378000 | 0.284000 |
0.370000 |
hsa-miR-548g-5p |
ttgCTTTTGCtctctctca |
13 |
UGCAAAAG | m7b | (m7b->m6c) | 0.378000 | 0.284000 |
0.370000 |
hsa-miR-548p |
ttgcTTTTGCTctctctca |
17 |
UAGCAAAA | m7b | Disrupted | 0.234000 | 0.086000 | No effect |
hsa-miR-548x-5p |
ttgCTTTTGCtctctctca |
13 |
UGCAAAAG | m7b | (m7b->m6c) | 0.378000 | 0.284000 |
0.370000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr11:g.15971984C>T | COSN8217036 | PCSI_0083_Pa_P_526 | [pancreas][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-34c-5p |
cagagcaACTGCCacacca |
2 |
AGGCAGUG | m6b | Created | -0.024000 | -0.067000 |
-1.130000 |
hsa-miR-3688-5p |
cagagcaacTGCCACacca |
14 |
AGUGGCAA | m6b | Created | -0.187000 | -0.266000 |
-0.990000 |
hsa-miR-449b-5p |
cagagcaACTGCCacacca |
2 |
AGGCAGUG | m6b | Created | -0.047000 | -0.097000 |
-0.620000 |
hsa-miR-548au-3p |
cagagcAACTGCCAcacca |
16 |
UGGCAGUU | m8a | Created | -0.242000 | -0.368000 |
-0.350000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr11:g.15972540C>G | COSN8534245 | tumor_4120193 | [haematopoietic_and_lymphoid_tissue][NS][lymphoid_neoplasm][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-3942-3p |
aacttATCTGAAcccgtag |
19 |
UUUCAGAU | m7b | Created | -0.009000 | -0.104000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr11:g.15972597T>G | COSN8217037 | PCSI_0002_Pa_P | [pancreas][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-3529-3p |
gttgTTGTTGTTttaattt |
10 |
AACAACAA | m8a | Created | -0.683000 | -0.778000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr11:g.15972676T>A | COSN5901945 | RK207_C01 | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-342-3p |
ttcgtaaaGTGTGAGAcag |
18 |
UCUCACAC | m8a | Disrupted | -0.401000 | no TS |
1.120000 |