SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
RefSeq ID: NM_152836
Gene Symbol: SNX16
Description: Homo sapiens sorting nexin 16 (SNX16), transcript variant 1, mRNA.
Gene Location: chr8(-):82711817-82754521
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr8:g.81799766A>C COSN2292423 RK001_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-4505 ctaaagcgaCCCAGCCact
 1
 AGGCUGGG m7b (m6b->m7b) -0.158000 -0.430000 -1.140000
hsa-miR-5589-5p ctaaagcgACCCAGCCact
 0 GGCUGGGU m8a Created no TS -0.192000 -2.160000
hsa-miR-4505 ctaaagcgaCCCAGCCact
 0 AGGCUGGG m7b (m6b->m7b) -0.158 -0.43 -1.14
hsa-miR-5589-5p ctaaagcgACCCAGCCact
 0 GGCUGGGU m8a Created no TS -0.192 -2.16


Mutation Mutation ID Sample Name Cancer Type
chr8:g.81800874C>T COSN8104453 8061178 [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr8:g.81800941G>T COSN4942221 PD4109a [breast][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-4775 tagaAAAATTActttctag
 8
 UUAAUUUU m7b Created 0.032000 0.097000 No effect
hsa-miR-548a-5p tagaaaaaTTACTTTctag
 0 AAAAGUAA m7b Created -0.374000 -0.408000 -0.080000
hsa-miR-548ab tagaaaaaTTACTTTctag
 0 AAAAGUAA m7b Created -0.371000 -0.405000 No effect
hsa-miR-548ak tagaaaaaTTACTTTctag
 0 AAAAGUAA m7b Created -0.346000 -0.389000 No effect
hsa-miR-548am-5p tagaaaaaTTACTTTctag
 0 AAAAGUAA m7b Created -0.355000 -0.398000 No effect
hsa-miR-548ap-5p tagaaaaaTTACTTTctag
 0 AAAAGUAA m7b Created -0.352000 -0.414000 -0.040000
hsa-miR-548aq-5p tagaaaaaTTACTTTCtag
 0 GAAAGUAA m8a Created -0.355000 -0.398000 -0.140000
hsa-miR-548ar-5p tagaaaaaTTACTTTctag
 0 AAAAGUAA m7b Created -0.374000 -0.417000 -0.010000
hsa-miR-548as-5p tagaaaaaTTACTTTctag
 0 AAAAGUAA m7b Created -0.352000 -0.386000 -0.010000
hsa-miR-548au-5p tagaaaaaTTACTTTctag
 0 AAAAGUAA m7b Created -0.355000 -0.398000 -0.010000
hsa-miR-548b-5p tagaaaaaTTACTTTctag
 0 AAAAGUAA m7b Created -0.355000 -0.398000 No effect
hsa-miR-548c-5p tagaaaaaTTACTTTctag
 0 AAAAGUAA m7b Created -0.355000 -0.398000 No effect
hsa-miR-548d-5p tagaaaaaTTACTTTctag
 0 AAAAGUAA m7b Created -0.355000 -0.398000 No effect
hsa-miR-548h-5p tagaaaaaTTACTTTctag
 0 AAAAGUAA m7b Created -0.346000 -0.389000 No effect
hsa-miR-548i tagaaaaaTTACTTTctag
 0 AAAAGUAA m7b Created -0.371000 -0.405000 -0.020000
hsa-miR-548j tagaaaaaTTACTTTctag
 0 AAAAGUAA m7b Created -0.352000 -0.414000 -0.110000
hsa-miR-548o-5p tagaaaaaTTACTTTctag
 0 AAAAGUAA m7b Created -0.355000 -0.398000 No effect
hsa-miR-548w tagaaaaaTTACTTTctag
 0 AAAAGUAA m7b Created -0.346000 -0.389000 No effect
hsa-miR-548y tagaaaaaTTACTTTctag
 0 AAAAGUAA m7b Created -0.346000 -0.389000 -0.010000
hsa-miR-559 tagaaaaaTTACTTTctag
 0 UAAAGUAA m7b Created -0.352000 -0.395000 No effect

Mutation Mutation ID Sample Name Cancer Type
chr8:g.81801252A>G COSN8519501 759_T [lung][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3161 aattctgTTATCAaggccc
 0 CUGAUAAG m6b Disrupted -0.036000 no TS 0.060000
hsa-miR-549 aattctGTTGTCAaggccc
 0 UGACAACU m7a Created no TS -0.114000 -7.470000


Mutation Mutation ID Sample Name Cancer Type
chr8:g.81801268T>G COSN5689375 RK088_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr8:g.81801427A>G COSN1368773 HCC77T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-4659a-3p tattttaaaAGAAGAAcca
 5
 UUUCUUCU m7b (m7b->m6b) -0.223000 -0.069000 0.010000
hsa-miR-4659b-3p tattttaaaAGAAGAAcca
 5
 UUUCUUCU m7b (m7b->m6b) -0.223000 -0.069000 0.020000
hsa-miR-4778-3p tattttaaAAGAAGAacca
 1
 UCUUCUUC m7a Disrupted -0.085000 no TS -3.860000
hsa-miR-4659a-3p tattttaaaAGAAGAAcca
 5
 UUUCUUCU m7b (m7b->m6b) -0.223000 -0.069000 0.010000
hsa-miR-4659b-3p tattttaaaAGAAGAAcca
 5
 UUUCUUCU m7b (m7b->m6b) -0.223000 -0.069000 0.020000
hsa-miR-4778-3p tattttaaAAGAAGAacca
 1
 UCUUCUUC m7a Disrupted -0.085000 no TS -3.860000
hsa-miR-4659a-3p tattttaaaAGAAGAAcca
 0 UUUCUUCU m7b (m7b->m6b) -0.223 -0.069 0.01
hsa-miR-4659b-3p tattttaaaAGAAGAAcca
 0 UUUCUUCU m7b (m7b->m6b) -0.223 -0.069 0.02
hsa-miR-4778-3p tattttaaAAGAAGAacca
 0 UCUUCUUC m7a Disrupted -0.085 no TS -3.86

Mutation Mutation ID Sample Name Cancer Type
chr8:g.81801435A>T COSN9682787 AOCS-166-1-2 [ovary][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-548l gcaaATACTTTTttaaaag
 2
 AAAAGUAU m8a Created -0.092000 -0.231000 0.510000
hsa-miR-548n gcaaaTACTTTTttaaaag
 0 CAAAAGUA m7b Created -0.384000 -0.510000 No effect

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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