SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
||||||||
Home | Search | Help | Download |
RefSeq ID: | NM_022133 |
---|---|
Gene Symbol: | SNX16 |
Description: | Homo sapiens sorting nexin 16 (SNX16), transcript variant 1, mRNA. |
Gene Location: | chr8(-):82711817-82754521 |
Browse Associations |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr8:g.81799766A>C | COSN2292423 | RK001_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-4505 |
ctaaagcgaCCCAGCCact |
1 |
AGGCUGGG | m7b | (m6b->m7b) | -0.158000 | -0.430000 |
-1.140000 |
|
hsa-miR-5589-5p |
ctaaagcgACCCAGCCact |
0 | GGCUGGGU | m8a | Created | no TS | -0.192000 |
-2.160000 |
|
hsa-miR-4505 |
ctaaagcgaCCCAGCCact |
0 | AGGCUGGG | m7b | (m6b->m7b) | -0.158 | -0.43 |
-1.14 |
|
hsa-miR-5589-5p |
ctaaagcgACCCAGCCact |
0 | GGCUGGGU | m8a | Created | no TS | -0.192 |
-2.16 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr8:g.81800874C>T | COSN8104453 | 8061178 | [pancreas][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr8:g.81800941G>T | COSN4942221 | PD4109a | [breast][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-4775 |
tagaAAAATTActttctag |
8 |
UUAAUUUU | m7b | Created | 0.032000 | 0.097000 | No effect | |
hsa-miR-548a-5p |
tagaaaaaTTACTTTctag |
0 | AAAAGUAA | m7b | Created | -0.374000 | -0.408000 |
-0.080000 |
|
hsa-miR-548ab |
tagaaaaaTTACTTTctag |
0 | AAAAGUAA | m7b | Created | -0.371000 | -0.405000 | No effect | |
hsa-miR-548ak |
tagaaaaaTTACTTTctag |
0 | AAAAGUAA | m7b | Created | -0.346000 | -0.389000 | No effect | |
hsa-miR-548am-5p |
tagaaaaaTTACTTTctag |
0 | AAAAGUAA | m7b | Created | -0.355000 | -0.398000 | No effect | |
hsa-miR-548ap-5p |
tagaaaaaTTACTTTctag |
0 | AAAAGUAA | m7b | Created | -0.352000 | -0.414000 |
-0.040000 |
|
hsa-miR-548aq-5p |
tagaaaaaTTACTTTCtag |
0 | GAAAGUAA | m8a | Created | -0.355000 | -0.398000 |
-0.140000 |
|
hsa-miR-548ar-5p |
tagaaaaaTTACTTTctag |
0 | AAAAGUAA | m7b | Created | -0.374000 | -0.417000 |
-0.010000 |
|
hsa-miR-548as-5p |
tagaaaaaTTACTTTctag |
0 | AAAAGUAA | m7b | Created | -0.352000 | -0.386000 |
-0.010000 |
|
hsa-miR-548au-5p |
tagaaaaaTTACTTTctag |
0 | AAAAGUAA | m7b | Created | -0.355000 | -0.398000 |
-0.010000 |
|
hsa-miR-548b-5p |
tagaaaaaTTACTTTctag |
0 | AAAAGUAA | m7b | Created | -0.355000 | -0.398000 | No effect | |
hsa-miR-548c-5p |
tagaaaaaTTACTTTctag |
0 | AAAAGUAA | m7b | Created | -0.355000 | -0.398000 | No effect | |
hsa-miR-548d-5p |
tagaaaaaTTACTTTctag |
0 | AAAAGUAA | m7b | Created | -0.355000 | -0.398000 | No effect | |
hsa-miR-548h-5p |
tagaaaaaTTACTTTctag |
0 | AAAAGUAA | m7b | Created | -0.346000 | -0.389000 | No effect | |
hsa-miR-548i |
tagaaaaaTTACTTTctag |
0 | AAAAGUAA | m7b | Created | -0.371000 | -0.405000 |
-0.020000 |
|
hsa-miR-548j |
tagaaaaaTTACTTTctag |
0 | AAAAGUAA | m7b | Created | -0.352000 | -0.414000 |
-0.110000 |
|
hsa-miR-548o-5p |
tagaaaaaTTACTTTctag |
0 | AAAAGUAA | m7b | Created | -0.355000 | -0.398000 | No effect | |
hsa-miR-548w |
tagaaaaaTTACTTTctag |
0 | AAAAGUAA | m7b | Created | -0.346000 | -0.389000 | No effect | |
hsa-miR-548y |
tagaaaaaTTACTTTctag |
0 | AAAAGUAA | m7b | Created | -0.346000 | -0.389000 |
-0.010000 |
|
hsa-miR-559 |
tagaaaaaTTACTTTctag |
0 | UAAAGUAA | m7b | Created | -0.352000 | -0.395000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr8:g.81801252A>G | COSN8519501 | 759_T | [lung][NS][carcinoma][squamous_cell_carcinoma] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-3161 |
aattctgTTATCAaggccc |
0 | CUGAUAAG | m6b | Disrupted | -0.036000 | no TS |
0.060000 |
|
hsa-miR-549 |
aattctGTTGTCAaggccc |
0 | UGACAACU | m7a | Created | no TS | -0.114000 |
-7.470000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr8:g.81801268T>G | COSN5689375 | RK088_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr8:g.81801427A>G | COSN1368773 | HCC77T | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-4659a-3p |
tattttaaaAGAAGAAcca |
5 |
UUUCUUCU | m7b | (m7b->m6b) | -0.223000 | -0.069000 |
0.010000 |
|
hsa-miR-4659b-3p |
tattttaaaAGAAGAAcca |
5 |
UUUCUUCU | m7b | (m7b->m6b) | -0.223000 | -0.069000 |
0.020000 |
|
hsa-miR-4778-3p |
tattttaaAAGAAGAacca |
1 |
UCUUCUUC | m7a | Disrupted | -0.085000 | no TS |
-3.860000 |
|
hsa-miR-4659a-3p |
tattttaaaAGAAGAAcca |
5 |
UUUCUUCU | m7b | (m7b->m6b) | -0.223000 | -0.069000 |
0.010000 |
|
hsa-miR-4659b-3p |
tattttaaaAGAAGAAcca |
5 |
UUUCUUCU | m7b | (m7b->m6b) | -0.223000 | -0.069000 |
0.020000 |
|
hsa-miR-4778-3p |
tattttaaAAGAAGAacca |
1 |
UCUUCUUC | m7a | Disrupted | -0.085000 | no TS |
-3.860000 |
|
hsa-miR-4659a-3p |
tattttaaaAGAAGAAcca |
0 | UUUCUUCU | m7b | (m7b->m6b) | -0.223 | -0.069 |
0.01 |
|
hsa-miR-4659b-3p |
tattttaaaAGAAGAAcca |
0 | UUUCUUCU | m7b | (m7b->m6b) | -0.223 | -0.069 |
0.02 |
|
hsa-miR-4778-3p |
tattttaaAAGAAGAacca |
0 | UCUUCUUC | m7a | Disrupted | -0.085 | no TS |
-3.86 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr8:g.81801435A>T | COSN9682787 | AOCS-166-1-2 | [ovary][NS][other][neoplasm] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-548l |
gcaaATACTTTTttaaaag |
2 |
AAAAGUAU | m8a | Created | -0.092000 | -0.231000 |
0.510000 |
hsa-miR-548n |
gcaaaTACTTTTttaaaag |
0 | CAAAAGUA | m7b | Created | -0.384000 | -0.510000 | No effect |
Location | SNP ID | Ancestral Allele |
Allele | miR ID | Conservation | miRSite | FuncClass | Validation | context+ score change |
---|---|---|---|---|---|---|---|---|---|
81801254 | rs112554150 | T | T |
hsa-miR-3161 |
9 |
attctgTTATCAA |
Disrupted |
N |
-0.036 |