SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_006444 |
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Gene Symbol: | SMC2 |
Description: | Homo sapiens structural maintenance of chromosomes 2 (SMC2), transcript variant 1, mRNA. |
Gene Location: | chr9(+):106856540-106903700 |
Browse Associations |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr9:g.104141180T>C | COSN2303531 | RK092_C01 | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-101-3p |
ttgtatGTACTGTcatatt |
0 | UACAGUAC | m7b | Created | no TS | -0.212000 |
-0.230000 |
hsa-miR-4645-3p |
ttgtatgTACTGTCatatt |
5 |
AGACAGUA | m7b | Created | -0.224000 | -0.549000 | No effect |
hsa-miR-101-3p |
ttgtatGTACTGTcatatt |
0 | UACAGUAC | m7b | Created | no TS | -0.212 |
-0.23 |
hsa-miR-4645-3p |
ttgtatgTACTGTCatatt |
0 | AGACAGUA | m7b | Created | -0.224 | -0.549 | No effect |
Location | SNP ID | Ancestral Allele |
Allele | miR ID | Conservation | miRSite | FuncClass | Validation | context+ score change |
---|---|---|---|---|---|---|---|---|---|
104139417 | rs182138855 | G | G |
hsa-miR-802 |
7 |
tactgTGTTACTt |
Disrupted |
N |
-0.164 |
A |
hsa-miR-101-3p hsa-miR-144-3p hsa-miR-374c-5p hsa-miR-655-3p |
0 |
TACTGTAttactt TACTGTAttactt tacTGTATTActt tacTGTATTActt |
Created Created Created Created |
N N N N |
-0.139 -0.125 -0.123 -0.141 |