SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
RefSeq ID: NM_001042550
Gene Symbol: SMC2
Description: Homo sapiens structural maintenance of chromosomes 2 (SMC2), transcript variant 1, mRNA.
Gene Location: chr9(+):106856830-106903700
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr9:g.104141180T>C COSN2303531 RK092_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-101-3p ttgtatGTACTGTcatatt
 0 UACAGUAC m7b Created no TS -0.212000 -0.230000
hsa-miR-4645-3p ttgtatgTACTGTCatatt
 5
 AGACAGUA m7b Created -0.224000 -0.549000 No effect
hsa-miR-101-3p ttgtatGTACTGTcatatt
 0 UACAGUAC m7b Created no TS -0.212 -0.23
hsa-miR-4645-3p ttgtatgTACTGTCatatt
 0 AGACAGUA m7b Created -0.224 -0.549 No effect

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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