SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
RefSeq ID: NM_016045
Gene Symbol: SLMO2
Description: Homo sapiens slowmo homolog 2 (Drosophila) (SLMO2), transcript variant 1, mRNA.
Gene Location: chr20(-):57608199-57617901
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr20:g.59034190T>A COSN9145165 AOCS-005-1-8 [ovary][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-182-5p aaaTTGCCAAgtgtcaaaa
 0 UUUGGCAA m7b (m6c->m7b) no TS -0.131000 -3.630000
hsa-miR-3117-5p aaattgccaAGTGTCaaaa
 0 AGACACUA m6b Created no TS -0.075000 -0.040000
hsa-miR-3614-5p aaattgCCAAGTGtcaaaa
 2
 CCACUUGG m7b Created -0.117000 -0.247000 -0.020000
hsa-miR-4643 aaattgcCATGTGTCaaaa
 9
 GACACAUG m8a Disrupted -0.052000 no TS 5.590000
hsa-miR-4717-3p aaattgCCATGTGTcaaaa
 10
 ACACAUGG m8a Disrupted -0.106000 no TS 4.640000
hsa-miR-642a-3p aaattgccATGTGTCaaaa
 8
 AGACACAU m7b Disrupted -0.116000 no TS 7.200000
hsa-miR-642b-3p aaattgccATGTGTCaaaa
 8
 AGACACAU m7b Disrupted -0.116000 no TS 6.600000

Mutation Mutation ID Sample Name Cancer Type
chr20:g.59034317G>A COSN15382548 0071_CRUK_PC_0071_T1_DNA [prostate][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-4641 tgctgtatCATGGGCtggt
 0 UGCCCAUG m7b Created no TS -0.253000 0.420000

Mutation Mutation ID Sample Name Cancer Type
chr20:g.59034743G>T COSN1251266 HCC116T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-607 gaactccTTTGAAactggt
 6
 GUUCAAAU m6b Created 0.108000 0.143000 -0.110000
hsa-miR-607 gaactccTTTGAAactggt
 6
 GUUCAAAU m6b Created 0.108000 0.143000 -0.110000
hsa-miR-607 gaactccTTTGAAactggt
 0 GUUCAAAU m6b Created 0.108 0.143 -0.11

Mutation Mutation ID Sample Name Cancer Type
chr20:g.59034868T>A COSN9145166 AOCS-119-3-9 [ovary][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-103b aaGGCTATGAgacttgatc
 4
 UCAUAGCC m8a (m7b->m8a) -0.310000 -0.493000 0.060000
hsa-miR-1264 aaggctatgAGACTTGatc
 0 CAAGUCUU m7a (m6a->m7a) -0.128000 -0.128000 -2.220000
hsa-miR-224-5p aaggctatGTGACTTGatc
 7
 CAAGUCAC m8a Disrupted -0.195000 no TS 0.350000
hsa-miR-3184-3p aaggctatGAGACTTgatc
 0 AAAGUCUC m7b Created no TS -0.204000 No effect

Mutation Mutation ID Sample Name Cancer Type
chr20:g.59034890G>T 9_64595 CRC-6-Tumor Colorectal adenocarcinoma
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3163 ttttttTTTTATAagttgg
 2
 UAUAAAAU m7a Created no TS 0.05 -0.01
hsa-miR-340-5p tttttttTTTATAAgttgg
 1
 UUAUAAAG m7a Created no TS 0.025 -0.1
hsa-miR-3613-3p tttTTTTTTGataagttgg
 3
 ACAAAAAA m7b (m7b->m6c) -0.049 0.07 -0.02

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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