SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_021097 |
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Gene Symbol: | SLC8A1 |
Description: | Homo sapiens solute carrier family 8 (sodium/calcium exchanger), member 1 (SLC8A1), transcript variant B, mRNA. |
Gene Location: | chr2(-):40339285-40657444 |
Browse Associations | |
Browse Pathways |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr2:g.40112209T>C | COSN10000183 | C0021T | [kidney][NS][other][neoplasm] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-3150b-3p |
tttTCTCCTCtctcattgt |
4 |
UGAGGAGA | m7b | (m6c->m7b) | -0.010000 | -0.254000 |
-1.630000 |
hsa-miR-4428 |
tttTCTCCTTtctcattgt |
0 | CAAGGAGA | m7b | (m7b->m6c) | -0.272000 | no TS |
0.010000 |
hsa-miR-4712-3p |
ttttctcctCTCTCATTgt |
0 | AAUGAGAG | m8a | (m7a->m8a) | no TS | -0.206000 |
-1.380000 |
hsa-miR-4784 |
tttTCTCCTCtctcattgt |
4 |
UGAGGAGA | m7b | (m6c->m7b) | -0.019000 | -0.263000 |
-2.580000 |
hsa-miR-539-5p |
ttttctccTTTCTCattgt |
2 |
GGAGAAAU | m6b | Disrupted | -0.060000 | no TS |
0.050000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr2:g.40112280A>T | COSN8609211 | 4095_T | [lung][NS][carcinoma][squamous_cell_carcinoma] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-4288 |
acaCAGACAAataaagttt |
0 | UUGUCUGC | m7a | (m7a->m6b) | -0.152000 | no TS |
-0.010000 |
hsa-miR-654-3p |
acaCAGACATAtaaagttt |
8 |
UAUGUCUG | m8a | Created | 0.014000 | -0.366000 |
-0.720000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr2:g.40112659->T | ICGC_sm100013 | RK015_C01 | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-3613-3p |
ttttTTTTTTGagaattgc |
0 | ACAAAAAA | m7b | Disrupted | -0.014000 | -0.016000 |
0.080000 |
hsa-miR-371a-5p |
tttttttTTTGAGaattgc |
0 | ACUCAAAC | m6b | Disrupted | -0.019000 | -0.020000 | No effect |
hsa-miR-371b-5p |
ttttttTTTTGAGaattgc |
0 | ACUCAAAA | m7b | Disrupted | 0.026000 | 0.025000 |
-0.010000 |
hsa-miR-373-5p |
ttttttTTTTGAGaattgc |
0 | ACUCAAAA | m7b | Disrupted | 0.035000 | 0.034000 |
-0.040000 |
hsa-miR-616-5p |
ttttttTTTTGAGaattgc |
0 | ACUCAAAA | m7b | Disrupted | 0.016000 | 0.015000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr2:g.40112659->TT | ICGC_ssm_v2_10981 | HX5T | [liver][NS][carcinoma][hepatocellular_carcinoma] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-3613-3p |
tttttTTTTTTGagaattgct |
0 | ACAAAAAA | m7b | Disrupted | -0.014000 | -0.018000 | No effect |
hsa-miR-371a-5p |
ttttttttTTTGAGaattgct |
0 | ACUCAAAC | m6b | Disrupted | -0.019000 | -0.022000 | No effect |
hsa-miR-371b-5p |
tttttttTTTTGAGaattgct |
0 | ACUCAAAA | m7b | Disrupted | 0.026000 | 0.022000 |
-0.080000 |
hsa-miR-373-5p |
tttttttTTTTGAGaattgct |
0 | ACUCAAAA | m7b | Disrupted | 0.035000 | 0.031000 |
-0.220000 |
hsa-miR-616-5p |
tttttttTTTTGAGaattgct |
0 | ACUCAAAA | m7b | Disrupted | 0.016000 | 0.012000 |
-0.020000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr2:g.40113273G>C | COSN9373396 | AOCS-088-3-8 | [ovary][NS][other][neoplasm] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-15b-3p |
ctctgtatTGATTCaaaaa |
0 | CGAAUCAU | m6b | Disrupted | -0.134000 | -0.133000 |
0.380000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr2:g.40113386C>G | COSN8993317 | 8057646 | [pancreas][NS][carcinoid-endocrine_tumour][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-1 |
ccaACATTCCAaagtagtg |
0 | UGGAAUGU | m8a | Disrupted | -0.014000 | 0.031000 |
0.260000 |
hsa-miR-206 |
ccaACATTCCAaagtagtg |
0 | UGGAAUGU | m8a | Disrupted | -0.004000 | 0.031000 |
0.220000 |
hsa-miR-3673 |
ccaaCATTCCAaagtagtg |
8 |
AUGGAAUG | m7b | Disrupted | -0.034000 | no TS |
0.050000 |
hsa-miR-613 |
ccaACATTCCaaagtagtg |
0 | AGGAAUGU | m7b | (m7b->m6c) | -0.025000 | 0.031000 |
0.260000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr2:g.40113518A>G | COSN7128644 | 8016470 | [pancreas][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-125b-2-3p |
cctctACTTGTGctgaaag |
0 | UCACAAGU | m7b | Created | no TS | 0.029000 |
-0.520000 |
hsa-miR-3065-3p |
cctctacttGTGCTGAaag |
0 | UCAGCACC | m7a | (m6a->m7a) | no TS | -0.025000 |
-4.270000 |
hsa-miR-4310 |
cctctacttATGCTGaaag |
7 |
GCAGCAUU | m6b | Disrupted | -0.048000 | -0.065000 |
0.860000 |
hsa-miR-5697 |
cctCTACTTGtgctgaaag |
0 | UCAAGUAG | m7b | (m6c->m7b) | no TS | 0.036000 |
-0.830000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr2:g.40113558G>A | COSN1839394 | RK025_C01 | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-3620 |
agaagcCAGGGTGAccaac |
4 |
UCACCCUG | m8a | Disrupted | -0.011000 | no TS | No effect |
hsa-miR-514a-5p |
agaagCCAGAGTgaccaac |
0 | UACUCUGG | m7b | Created | no TS | 0.018000 | No effect |
hsa-miR-668 |
agaagccaGAGTGACcaac |
0 | UGUCACUC | m7b | Created | no TS | -0.010000 |
-7.490000 |
hsa-miR-3620 |
agaagcCAGGGTGAccaac |
4 |
UCACCCUG | m8a | Disrupted | -0.011000 | no TS | No effect |
hsa-miR-514a-5p |
agaagCCAGAGTgaccaac |
0 | UACUCUGG | m7b | Created | no TS | 0.018000 | No effect |
hsa-miR-668 |
agaagccaGAGTGACcaac |
0 | UGUCACUC | m7b | Created | no TS | -0.010000 |
-7.490000 |
hsa-miR-3620 |
agaagcCAGGGTGAccaac |
0 | UCACCCUG | m8a | Disrupted | -0.011 | no TS | No effect |
hsa-miR-514a-5p |
agaagCCAGAGTgaccaac |
0 | UACUCUGG | m7b | Created | no TS | 0.018 | No effect |
hsa-miR-668 |
agaagccaGAGTGACcaac |
0 | UGUCACUC | m7b | Created | no TS | -0.01 |
-7.49 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr2:g.40113882A>G | COSN1839395 | RK056_C01 | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-20b-3p |
caaACTACAGagatcttca |
0 | ACUGUAGU | m7b | (m6c->m7b) | no TS | -0.008000 |
-2.420000 |
hsa-miR-3674 |
caaaCTACAAagatcttca |
5 |
AUUGUAGA | m6b | Disrupted | 0.065000 | no TS | No effect |
hsa-miR-20b-3p |
caaACTACAGagatcttca |
0 | ACUGUAGU | m7b | (m6c->m7b) | no TS | -0.008 |
-2.42 |
hsa-miR-3674 |
caaaCTACAAagatcttca |
0 | AUUGUAGA | m6b | Disrupted | 0.065 | no TS | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr2:g.40114112A>G | COSN6181335 | RK308_C01 | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-625-3p |
gtagagTATAGTacatact |
11 |
GACUAUAG | m6b | Disrupted | 0.114000 | 0.084000 |
0.530000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr2:g.40114293G>C | COSN9373397 | AOCS-112-1-2 | [ovary][NS][other][neoplasm] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-4480 |
gttgCTTGGCattgtctgt |
0 | AGCCAAGU | m6b | Created | no TS | -0.071000 |
-0.010000 |
hsa-miR-4733-5p |
gttgcTTGGGATTgtctgt |
0 | AAUCCCAA | m8a | Disrupted | -0.031000 | -0.031000 |
4.160000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr2:g.40115087C>A | COSN5503613 | RK155_C01 | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-1 |
catcacctcACATTCCcag |
0 | UGGAAUGU | m7b | (m6b->m7b) | -0.014000 | -0.086000 |
-0.910000 |
hsa-miR-1294 |
catcACCTCACAttcccag |
0 | UGUGAGGU | m8a | Created | no TS | -0.354000 |
-2.660000 |
hsa-miR-149-3p |
catcaCCTCCCattcccag |
7 |
AGGGAGGG | m6b | Disrupted | -0.170000 | -0.031000 | No effect |
hsa-miR-206 |
catcacctcACATTCCcag |
0 | UGGAAUGU | m7b | (m6b->m7b) | -0.004000 | -0.085000 |
-0.320000 |
hsa-miR-30b-3p |
catcaCCTCCCAttcccag |
7 |
CUGGGAGG | m7b | Disrupted | -0.299000 | -0.055000 |
3.480000 |
hsa-miR-3689a-3p |
catcaCCTCCCAttcccag |
7 |
CUGGGAGG | m7b | Disrupted | -0.290000 | -0.055000 |
0.290000 |
hsa-miR-3689b-3p |
catcaCCTCCCAttcccag |
7 |
CUGGGAGG | m7b | Disrupted | -0.300000 | -0.065000 |
0.050000 |
hsa-miR-3689c |
catcaCCTCCCAttcccag |
7 |
CUGGGAGG | m7b | Disrupted | -0.300000 | -0.065000 |
0.050000 |
hsa-miR-3689d |
catCACCTCCCattcccag |
7 |
GGGAGGUG | m8a | Disrupted | -0.388000 | -0.159000 |
0.070000 |
hsa-miR-4316 |
catcaCCTCACattcccag |
0 | GGUGAGGC | m6b | Created | no TS | -0.156000 |
-0.120000 |
hsa-miR-613 |
catcacctcACATTCCcag |
0 | AGGAAUGU | m7b | (m6b->m7b) | -0.025000 | -0.097000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr2:g.40115237T>G | COSN1839396 | RK092_C01 | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-5684 |
tatcagaTAGAGTaaattt |
14 |
AACUCUAG | m6b | Created | -0.044000 | -0.088000 | No effect |
hsa-miR-625-3p |
tatcagaTATAGTaaattt |
11 |
GACUAUAG | m6b | Disrupted | 0.114000 | 0.076000 | No effect |
hsa-miR-5684 |
tatcagaTAGAGTaaattt |
0 | AACUCUAG | m6b | Created | -0.044 | -0.088 | No effect |
hsa-miR-625-3p |
tatcagaTATAGTaaattt |
0 | GACUAUAG | m6b | Disrupted | 0.114 | 0.076 | No effect |