SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_020342 |
---|---|
Gene Symbol: | SLC39A10 |
Description: | Homo sapiens solute carrier family 39 (zinc transporter), member 10 (SLC39A10), transcript variant 1, mRNA. |
Gene Location: | chr2(+):196521851-196602426 |
Browse Associations |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr2:g.195735107C>T | COSN1231135 | BN19T | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-101-3p |
ttccttGTACTGTAtgcac |
15 |
UACAGUAC | m8a | Disrupted | -0.514000 | -0.170000 | No effect | |
hsa-miR-300 |
ttcCTTGTATtgtatgcac |
16 |
UAUACAAG | m7b | (m6b->m7b) | -0.022000 | -0.128000 |
-1.870000 |
|
hsa-miR-338-5p |
ttccttgTATTGTatgcac |
0 | AACAAUAU | m6b | Created | no TS | -0.023000 |
-0.120000 |
|
hsa-miR-381 |
ttcCTTGTATtgtatgcac |
16 |
UAUACAAG | m7b | (m6b->m7b) | -0.015000 | -0.102000 |
-0.830000 |
|
hsa-miR-4666a-3p |
ttccttgtATTGTATGcac |
11 |
CAUACAAU | m8a | Created | 0.014000 | -0.034000 |
-0.010000 |
|
hsa-miR-101-3p |
ttccttGTACTGTAtgcac |
15 |
UACAGUAC | m8a | Disrupted | -0.514000 | -0.170000 | No effect | |
hsa-miR-300 |
ttcCTTGTATtgtatgcac |
16 |
UAUACAAG | m7b | (m6b->m7b) | -0.022000 | -0.128000 |
-1.870000 |
|
hsa-miR-338-5p |
ttccttgTATTGTatgcac |
0 | AACAAUAU | m6b | Created | no TS | -0.023000 |
-0.120000 |
|
hsa-miR-381 |
ttcCTTGTATtgtatgcac |
16 |
UAUACAAG | m7b | (m6b->m7b) | -0.015000 | -0.102000 |
-0.830000 |
|
hsa-miR-4666a-3p |
ttccttgtATTGTATGcac |
11 |
CAUACAAU | m8a | Created | 0.014000 | -0.034000 |
-0.010000 |
|
hsa-miR-101-3p |
ttccttGTACTGTAtgcac |
15 |
UACAGUAC | m8a | Disrupted | -0.514000 | -0.170000 | No effect | |
hsa-miR-300 |
ttcCTTGTATtgtatgcac |
16 |
UAUACAAG | m7b | (m6b->m7b) | -0.022000 | -0.128000 |
-1.870000 |
|
hsa-miR-338-5p |
ttccttgTATTGTatgcac |
0 | AACAAUAU | m6b | Created | no TS | -0.023000 |
-0.120000 |
|
hsa-miR-381 |
ttcCTTGTATtgtatgcac |
16 |
UAUACAAG | m7b | (m6b->m7b) | -0.015000 | -0.102000 |
-0.830000 |
|
hsa-miR-4666a-3p |
ttccttgtATTGTATGcac |
11 |
CAUACAAU | m8a | Created | 0.014000 | -0.034000 |
-0.010000 |
|
hsa-miR-101-3p |
ttccttGTACTGTAtgcac |
15 |
UACAGUAC | m8a | Disrupted | -0.514 | -0.17 | No effect | |
hsa-miR-300 |
ttcCTTGTATtgtatgcac |
0 | UAUACAAG | m7b | (m6b->m7b) | -0.022 | -0.128 |
-1.87 |
|
hsa-miR-338-5p |
ttccttgTATTGTatgcac |
0 | AACAAUAU | m6b | Created | no TS | -0.023 |
-0.12 |
|
hsa-miR-381 |
ttcCTTGTATtgtatgcac |
0 | UAUACAAG | m7b | (m6b->m7b) | -0.015 | -0.102 |
-0.83 |
|
hsa-miR-4666a-3p |
ttccttgtATTGTATGcac |
0 | CAUACAAU | m8a | Created | 0.014 | -0.034 |
-0.01 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr2:g.195735487A>G | COSN1231137 | HX13T | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-1277-5p |
cagctacATATATTcatgt |
17 |
AAAUAUAU | m7b | Disrupted | 0.161000 | 0.094000 | No effect | |
hsa-miR-3924 |
cagcTACATATattcatgt |
0 | AUAUGUAU | m7a | Disrupted | NA | NA |
0.010000 |
|
hsa-miR-4666a-5p |
cagctACATGTATtcatgt |
0 | AUACAUGU | m8a | Created | no TS | -0.108000 | No effect | |
hsa-miR-1277-5p |
cagctacATATATTcatgt |
17 |
AAAUAUAU | m7b | Disrupted | 0.161000 | 0.094000 | No effect | |
hsa-miR-3924 |
cagcTACATATattcatgt |
0 | AUAUGUAU | m7a | Disrupted | NA | NA |
0.010000 |
|
hsa-miR-4666a-5p |
cagctACATGTATtcatgt |
0 | AUACAUGU | m8a | Created | no TS | -0.108000 | No effect | |
hsa-miR-1277-5p |
cagctacATATATTcatgt |
2 |
AAAUAUAU | m7b | Disrupted | 0.161 | 0.094 | No effect | |
hsa-miR-3924 |
cagcTACATATattcatgt |
0 | AUAUGUAU | m7a | Disrupted | NA | NA |
0.01 |
|
hsa-miR-4666a-5p |
cagctACATGTATtcatgt |
0 | AUACAUGU | m8a | Created | no TS | -0.108 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr2:g.195736230G>C | COSN8608282 | J90_T | [lung][NS][carcinoma][squamous_cell_carcinoma] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-3622a-5p |
ttgGTGCCTGatagggatt |
0 | CAGGCACG | m7a | (m7a->m6a) | NA | NA |
-0.760000 |
|
hsa-miR-4269 |
ttgGTGCCTGatagggatt |
6 |
GCAGGCAC | m7b | (m7b->m6b) | -0.304000 | -0.133000 |
6.010000 |
|
hsa-miR-4514 |
ttggTGCCTGatagggatt |
6 |
ACAGGCAG | m6b | Disrupted | -0.133000 | -0.125000 | No effect | |
hsa-miR-454-5p |
ttggtgcctGATAGGGatt |
3 |
ACCCUAUC | m7b | (m7b->m6c) | -0.506000 | -0.403000 |
0.010000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr2:g.195736406T>C | COSN9870707 | C0021T | [kidney][NS][other][neoplasm] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-299-5p |
cagGTAAACCgtatttgaa |
0 | UGGUUUAC | m7b | (m6b->m7b) | no TS | 0.025000 |
-1.680000 |
|
hsa-miR-582-5p |
caggtaAACTGTAtttgaa |
10 |
UUACAGUU | m7b | Disrupted | 0.003000 | no TS | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr2:g.195737117T>A | COSN14512254 | 8034278 | [pancreas][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-186-5p |
gtattatctTTCTTTattt |
0 | CAAAGAAU | m6b | Disrupted | 0.106000 | 0.073000 |
0.010000 |
|
hsa-miR-4662a-3p |
gtattatCTATCTTTattt |
0 | AAAGAUAG | m8a | Created | -0.051000 | -0.217000 |
-0.040000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr2:g.195737227C>G | COSN6162499 | RK053_C01 | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-10b-3p |
atagacAATCTGaattcca |
11 |
ACAGAUUC | m6b | Disrupted | -0.211000 | -0.146000 |
0.060000 |
hsa-miR-130a-5p |
atagacAATGTGAAttcca |
0 | UUCACAUU | m8a | Created | -0.167000 | -0.310000 | No effect |
hsa-miR-219-5p |
ataGACAATCtgaattcca |
16 |
UGAUUGUC | m7b | (m7b->m6b) | -0.187000 | no TS |
0.350000 |
hsa-miR-23a-3p |
atagacAATGTGAattcca |
0 | AUCACAUU | m7b | Created | -0.130000 | -0.252000 | No effect |
hsa-miR-23b-3p |
atagacAATGTGAattcca |
0 | AUCACAUU | m7b | Created | -0.130000 | -0.262000 |
-0.010000 |
hsa-miR-23c |
atagacAATGTGAattcca |
0 | AUCACAUU | m7b | Created | -0.149000 | -0.281000 | No effect |
hsa-miR-3942-3p |
atagacaATCTGAAttcca |
11 |
UUUCAGAU | m7b | Disrupted | -0.197000 | -0.061000 |
0.080000 |
hsa-miR-4782-3p |
ataGACAATCtgaattcca |
16 |
UGAUUGUC | m7b | (m7b->m6b) | -0.205000 | no TS |
2.970000 |
Location | SNP ID | Ancestral Allele |
Allele | miR ID | Conservation | miRSite | FuncClass | Validation | context+ score change |
---|---|---|---|---|---|---|---|---|---|
195736676 | rs56002442 | - | - |
hsa-miR-186-5p hsa-miR-3133 |
4 4 |
aggtgttatTTCTTTAatt aggtgttatTTCTTTAatt |
Unknown Unknown |
N N |
0.002 0.015 |
ATTT |
hsa-miR-5692a |
3 |
aggtgttATTATTTtctttaatt |
Unknown |
N |
0.098 |
|||
195736861 | rs114234807 | C | C |
hsa-miR-34a-5p hsa-miR-34c-5p hsa-miR-449a hsa-miR-449b-5p hsa-miR-4715-5p hsa-miR-548au-3p hsa-miR-7150 |
12 12 12 12 10 12 12 |
gtACTGCCAactt gtACTGCCAactt gtACTGCCAactt gtACTGCCAactt gtactGCCAACTt gtACTGCCAactt gtaCTGCCAActt |
Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted |
N N N N N N N |
-0.107 -0.11 -0.11 -0.11 -0.2 -0.119 -0.09 |
T |
hsa-miR-101-3p hsa-miR-4645-3p |
10 11 |
GTACTGTcaactt gTACTGTCAactt |
Created Created |
N N |
-0.177 -0.164 |
|||
195737038 | rs3049426 | - | - |
hsa-miR-4269 hsa-miR-4514 hsa-miR-4692 hsa-miR-4729 hsa-miR-4742-5p hsa-miR-6715b-5p |
6 6 6 3 6 6 |
taaaataaaTGCCTGAttg taaaataaaTGCCTGAttg taaaataaaTGCCTGAttg taaaATAAATGcctgattg taaaataaaTGCCTGAttg taaaataaaTGCCTGAttg |
Unknown Unknown Unknown Unknown Unknown Unknown |
N N N N N N |
-0.002 0.005 0.008 -0.026 0.012 0.005 |
AAAT | |||||||||
195737039 | rs201256758 | G | G |
hsa-miR-4269 hsa-miR-4514 hsa-miR-4692 hsa-miR-4729 hsa-miR-4742-5p hsa-miR-6715b-5p |
6 6 6 3 6 6 |
ataaaTGCCTGAt ataaaTGCCTGAt ataaaTGCCTGAt ATAAATGcctgat ataaaTGCCTGAt ataaaTGCCTGAt |
Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted |
N N N N N N |
-0.133 -0.125 -0.128 -0.018 -0.154 -0.143 |
A |
hsa-miR-4678 |
8 |
ataAATACCTgat |
Created |
N |
-0.148 |
|||
195737041 | rs200557160 | C | C |
hsa-miR-4269 hsa-miR-4514 hsa-miR-4692 hsa-miR-4742-5p hsa-miR-6715b-5p |
6 6 6 6 6 |
aaaTGCCTGAttg aaaTGCCTGAttg aaaTGCCTGAttg aaaTGCCTGAttg aaaTGCCTGAttg |
Disrupted Disrupted Disrupted Disrupted Disrupted |
N N N N N |
-0.133 -0.125 -0.128 -0.154 -0.143 |
A |
hsa-miR-586 |
8 |
aAATGCATgattg |
Created |
N |
-0.172 |
|||
195737116 | rs201949166 | - | - | 0 |
|
||||
ATCT |
hsa-miR-4662a-3p hsa-miR-577 |
0 |
ggtattatCTATCTTtctttatt ggtaTTATCTAtctttctttatt |
Unknown Unknown |
N N |
-0.15 -0.005 |
|||
195737224 | rs145407519 | - | - |
hsa-miR-10b-3p hsa-miR-4796-5p |
11 2 |
taatagacAATCTGAat taATAGACAatctgaat |
Unknown Unknown |
N N |
-0.066 0.001 |
ATC |
hsa-miR-219a-5p hsa-miR-4445-5p hsa-miR-4782-3p hsa-miR-508-3p hsa-miR-6766-3p |
12 12 12 12 12 |
taataGACAATCAtctgaat taatagACAATCAtctgaat taataGACAATCAtctgaat taatagACAATCAtctgaat taataGACAATCAtctgaat |
Unknown Unknown Unknown Unknown Unknown |
N N N N N |
-0.114 -0.088 -0.117 -0.093 -0.116 |
|||
195737367 | rs145741694 | - | - |
hsa-miR-5011-5p |
2 |
tggTATATATcaatcaatc |
Unknown |
N |
-0.001 |
TCAA |
hsa-miR-1277-5p hsa-miR-5585-3p hsa-miR-653-5p |
2 0 0 |
tggtATATATTcaacaatcaatc tggtataTATTCAAcaatcaatc tggtatataTTCAACAAtcaatc |
Unknown Unknown Unknown |
N N N |
-0.012 -0.04 -0.273 |
|||
195737437 | rs699309 | A | A |
hsa-miR-625-3p |
12 |
aataCTATAGTAa |
Disrupted |
N |
-0.338 |
G |
hsa-miR-101-3p hsa-miR-139-5p hsa-miR-144-3p hsa-miR-16-1-3p |
12 12 12 11 |
aaTACTGTAgtaa aatACTGTAGtaa aATACTGTAgtaa AATACTGtagtaa |
Created Created Created Created |
N N N N |
-0.096 -0.217 -0.24 -0.146 |