SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
  Home Search Help Download  

PolymiRTS Database

Prediction criteria: TargetScan sites only     All 6mer or longer seed matches

RefSeq ID: NM_020342
Gene Symbol: SLC39A10
Description: Homo sapiens solute carrier family 39 (zinc transporter), member 10 (SLC39A10), transcript variant 1, mRNA.
Gene Location: chr2(+):196521851-196602426
Browse Associations

Somatic mutations that impact miRNA target sites



Mutation Mutation ID Sample Name Cancer Type
chr2:g.195735107C>T COSN1231135 BN19T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-101-3p ttccttGTACTGTAtgcac
15
UACAGUAC m8a Disrupted -0.514000 -0.170000 No effect
hsa-miR-300 ttcCTTGTATtgtatgcac
16
UAUACAAG m7b (m6b->m7b) -0.022000 -0.128000 -1.870000
hsa-miR-338-5p ttccttgTATTGTatgcac
0 AACAAUAU m6b Created no TS -0.023000 -0.120000
hsa-miR-381 ttcCTTGTATtgtatgcac
16
UAUACAAG m7b (m6b->m7b) -0.015000 -0.102000 -0.830000
hsa-miR-4666a-3p ttccttgtATTGTATGcac
11
CAUACAAU m8a Created 0.014000 -0.034000 -0.010000
hsa-miR-101-3p ttccttGTACTGTAtgcac
15
UACAGUAC m8a Disrupted -0.514000 -0.170000 No effect
hsa-miR-300 ttcCTTGTATtgtatgcac
16
UAUACAAG m7b (m6b->m7b) -0.022000 -0.128000 -1.870000
hsa-miR-338-5p ttccttgTATTGTatgcac
0 AACAAUAU m6b Created no TS -0.023000 -0.120000
hsa-miR-381 ttcCTTGTATtgtatgcac
16
UAUACAAG m7b (m6b->m7b) -0.015000 -0.102000 -0.830000
hsa-miR-4666a-3p ttccttgtATTGTATGcac
11
CAUACAAU m8a Created 0.014000 -0.034000 -0.010000
hsa-miR-101-3p ttccttGTACTGTAtgcac
15
UACAGUAC m8a Disrupted -0.514000 -0.170000 No effect
hsa-miR-300 ttcCTTGTATtgtatgcac
16
UAUACAAG m7b (m6b->m7b) -0.022000 -0.128000 -1.870000
hsa-miR-338-5p ttccttgTATTGTatgcac
0 AACAAUAU m6b Created no TS -0.023000 -0.120000
hsa-miR-381 ttcCTTGTATtgtatgcac
16
UAUACAAG m7b (m6b->m7b) -0.015000 -0.102000 -0.830000
hsa-miR-4666a-3p ttccttgtATTGTATGcac
11
CAUACAAU m8a Created 0.014000 -0.034000 -0.010000
hsa-miR-101-3p ttccttGTACTGTAtgcac
15
UACAGUAC m8a Disrupted -0.514 -0.17 No effect
hsa-miR-300 ttcCTTGTATtgtatgcac
0 UAUACAAG m7b (m6b->m7b) -0.022 -0.128 -1.87
hsa-miR-338-5p ttccttgTATTGTatgcac
0 AACAAUAU m6b Created no TS -0.023 -0.12
hsa-miR-381 ttcCTTGTATtgtatgcac
0 UAUACAAG m7b (m6b->m7b) -0.015 -0.102 -0.83
hsa-miR-4666a-3p ttccttgtATTGTATGcac
0 CAUACAAU m8a Created 0.014 -0.034 -0.01

Mutation Mutation ID Sample Name Cancer Type
chr2:g.195735487A>G COSN1231137 HX13T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-1277-5p cagctacATATATTcatgt
17
AAAUAUAU m7b Disrupted 0.161000 0.094000 No effect
hsa-miR-3924 cagcTACATATattcatgt
0 AUAUGUAU m7a Disrupted NA NA 0.010000
hsa-miR-4666a-5p cagctACATGTATtcatgt
0 AUACAUGU m8a Created no TS -0.108000 No effect
hsa-miR-1277-5p cagctacATATATTcatgt
17
AAAUAUAU m7b Disrupted 0.161000 0.094000 No effect
hsa-miR-3924 cagcTACATATattcatgt
0 AUAUGUAU m7a Disrupted NA NA 0.010000
hsa-miR-4666a-5p cagctACATGTATtcatgt
0 AUACAUGU m8a Created no TS -0.108000 No effect
hsa-miR-1277-5p cagctacATATATTcatgt
2
AAAUAUAU m7b Disrupted 0.161 0.094 No effect
hsa-miR-3924 cagcTACATATattcatgt
0 AUAUGUAU m7a Disrupted NA NA 0.01
hsa-miR-4666a-5p cagctACATGTATtcatgt
0 AUACAUGU m8a Created no TS -0.108 No effect

Mutation Mutation ID Sample Name Cancer Type
chr2:g.195736230G>C COSN8608282 J90_T [lung][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3622a-5p ttgGTGCCTGatagggatt
0 CAGGCACG m7a (m7a->m6a) NA NA -0.760000
hsa-miR-4269 ttgGTGCCTGatagggatt
6
GCAGGCAC m7b (m7b->m6b) -0.304000 -0.133000 6.010000
hsa-miR-4514 ttggTGCCTGatagggatt
6
ACAGGCAG m6b Disrupted -0.133000 -0.125000 No effect
hsa-miR-454-5p ttggtgcctGATAGGGatt
3
ACCCUAUC m7b (m7b->m6c) -0.506000 -0.403000 0.010000

Mutation Mutation ID Sample Name Cancer Type
chr2:g.195736406T>C COSN9870707 C0021T [kidney][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-299-5p cagGTAAACCgtatttgaa
0 UGGUUUAC m7b (m6b->m7b) no TS 0.025000 -1.680000
hsa-miR-582-5p caggtaAACTGTAtttgaa
10
UUACAGUU m7b Disrupted 0.003000 no TS No effect

Mutation Mutation ID Sample Name Cancer Type
chr2:g.195737117T>A COSN14512254 8034278 [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-186-5p gtattatctTTCTTTattt
0 CAAAGAAU m6b Disrupted 0.106000 0.073000 0.010000
hsa-miR-4662a-3p gtattatCTATCTTTattt
0 AAAGAUAG m8a Created -0.051000 -0.217000 -0.040000

Mutation Mutation ID Sample Name Cancer Type
chr2:g.195737227C>G COSN6162499 RK053_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-10b-3p atagacAATCTGaattcca
11
ACAGAUUC m6b Disrupted -0.211000 -0.146000 0.060000
hsa-miR-130a-5p atagacAATGTGAAttcca
0 UUCACAUU m8a Created -0.167000 -0.310000 No effect
hsa-miR-219-5p ataGACAATCtgaattcca
16
UGAUUGUC m7b (m7b->m6b) -0.187000 no TS 0.350000
hsa-miR-23a-3p atagacAATGTGAattcca
0 AUCACAUU m7b Created -0.130000 -0.252000 No effect
hsa-miR-23b-3p atagacAATGTGAattcca
0 AUCACAUU m7b Created -0.130000 -0.262000 -0.010000
hsa-miR-23c atagacAATGTGAattcca
0 AUCACAUU m7b Created -0.149000 -0.281000 No effect
hsa-miR-3942-3p atagacaATCTGAAttcca
11
UUUCAGAU m7b Disrupted -0.197000 -0.061000 0.080000
hsa-miR-4782-3p ataGACAATCtgaattcca
16
UGAUUGUC m7b (m7b->m6b) -0.205000 no TS 2.970000

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



Germline mutations in target sites of miRNAs in somatic mutation table

Location SNP ID Ancestral
Allele
Allele miR ID Conservation miRSite FuncClass Validation context+
score change
195736676 rs56002442 - - hsa-miR-186-5p
hsa-miR-3133
4
4
aggtgttatTTCTTTAatt
aggtgttatTTCTTTAatt
Unknown
Unknown
N
N
0.002
0.015
ATTT hsa-miR-5692a
3
aggtgttATTATTTtctttaatt
Unknown
N
0.098
195736861 rs114234807 C C hsa-miR-34a-5p
hsa-miR-34c-5p
hsa-miR-449a
hsa-miR-449b-5p
hsa-miR-4715-5p
hsa-miR-548au-3p
hsa-miR-7150
12
12
12
12
10
12
12
gtACTGCCAactt
gtACTGCCAactt
gtACTGCCAactt
gtACTGCCAactt
gtactGCCAACTt
gtACTGCCAactt
gtaCTGCCAActt
Disrupted
Disrupted
Disrupted
Disrupted
Disrupted
Disrupted
Disrupted
N
N
N
N
N
N
N
-0.107
-0.11
-0.11
-0.11
-0.2
-0.119
-0.09
T hsa-miR-101-3p
hsa-miR-4645-3p
10
11
GTACTGTcaactt
gTACTGTCAactt
Created
Created
N
N
-0.177
-0.164
195737038 rs3049426 - - hsa-miR-4269
hsa-miR-4514
hsa-miR-4692
hsa-miR-4729
hsa-miR-4742-5p
hsa-miR-6715b-5p
6
6
6
3
6
6
taaaataaaTGCCTGAttg
taaaataaaTGCCTGAttg
taaaataaaTGCCTGAttg
taaaATAAATGcctgattg
taaaataaaTGCCTGAttg
taaaataaaTGCCTGAttg
Unknown
Unknown
Unknown
Unknown
Unknown
Unknown
N
N
N
N
N
N
-0.002
0.005
0.008
-0.026
0.012
0.005
AAAT
195737039 rs201256758 G G hsa-miR-4269
hsa-miR-4514
hsa-miR-4692
hsa-miR-4729
hsa-miR-4742-5p
hsa-miR-6715b-5p
6
6
6
3
6
6
ataaaTGCCTGAt
ataaaTGCCTGAt
ataaaTGCCTGAt
ATAAATGcctgat
ataaaTGCCTGAt
ataaaTGCCTGAt
Disrupted
Disrupted
Disrupted
Disrupted
Disrupted
Disrupted
N
N
N
N
N
N
-0.133
-0.125
-0.128
-0.018
-0.154
-0.143
A hsa-miR-4678
8
ataAATACCTgat
Created
N
-0.148
195737041 rs200557160 C C hsa-miR-4269
hsa-miR-4514
hsa-miR-4692
hsa-miR-4742-5p
hsa-miR-6715b-5p
6
6
6
6
6
aaaTGCCTGAttg
aaaTGCCTGAttg
aaaTGCCTGAttg
aaaTGCCTGAttg
aaaTGCCTGAttg
Disrupted
Disrupted
Disrupted
Disrupted
Disrupted
N
N
N
N
N
-0.133
-0.125
-0.128
-0.154
-0.143
A hsa-miR-586
8
aAATGCATgattg
Created
N
-0.172
195737116 rs201949166 - - 0
ATCT hsa-miR-4662a-3p
hsa-miR-577
0 ggtattatCTATCTTtctttatt
ggtaTTATCTAtctttctttatt
Unknown
Unknown
N
N
-0.15
-0.005
195737224 rs145407519 - - hsa-miR-10b-3p
hsa-miR-4796-5p
11
2
taatagacAATCTGAat
taATAGACAatctgaat
Unknown
Unknown
N
N
-0.066
0.001
ATC hsa-miR-219a-5p
hsa-miR-4445-5p
hsa-miR-4782-3p
hsa-miR-508-3p
hsa-miR-6766-3p
12
12
12
12
12
taataGACAATCAtctgaat
taatagACAATCAtctgaat
taataGACAATCAtctgaat
taatagACAATCAtctgaat
taataGACAATCAtctgaat
Unknown
Unknown
Unknown
Unknown
Unknown
N
N
N
N
N
-0.114
-0.088
-0.117
-0.093
-0.116
195737367 rs145741694 - - hsa-miR-5011-5p
2
tggTATATATcaatcaatc
Unknown
N
-0.001
TCAA hsa-miR-1277-5p
hsa-miR-5585-3p
hsa-miR-653-5p
2
0
0
tggtATATATTcaacaatcaatc
tggtataTATTCAAcaatcaatc
tggtatataTTCAACAAtcaatc
Unknown
Unknown
Unknown
N
N
N
-0.012
-0.04
-0.273
195737437 rs699309 A A hsa-miR-625-3p
12
aataCTATAGTAa
Disrupted
N
-0.338
G hsa-miR-101-3p
hsa-miR-139-5p
hsa-miR-144-3p
hsa-miR-16-1-3p
12
12
12
11
aaTACTGTAgtaa
aatACTGTAGtaa
aATACTGTAgtaa
AATACTGtagtaa
Created
Created
Created
Created
N
N
N
N
-0.096
-0.217
-0.24
-0.146

Genome Browser