SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
RefSeq ID: NM_001127257
Gene Symbol: SLC39A10
Description: Homo sapiens solute carrier family 39 (zinc transporter), member 10 (SLC39A10), transcript variant 1, mRNA.
Gene Location: chr2(+):196521531-196602426
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr2:g.195735107C>T COSN1231135 BN19T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-101-3p ttccttGTACTGTAtgcac
 15
 UACAGUAC m8a Disrupted -0.514000 -0.170000 No effect
hsa-miR-300 ttcCTTGTATtgtatgcac
 16
 UAUACAAG m7b (m6b->m7b) -0.022000 -0.128000 -1.870000
hsa-miR-338-5p ttccttgTATTGTatgcac
 0 AACAAUAU m6b Created no TS -0.023000 -0.120000
hsa-miR-381 ttcCTTGTATtgtatgcac
 16
 UAUACAAG m7b (m6b->m7b) -0.015000 -0.102000 -0.830000
hsa-miR-4666a-3p ttccttgtATTGTATGcac
 11
 CAUACAAU m8a Created 0.014000 -0.034000 -0.010000
hsa-miR-101-3p ttccttGTACTGTAtgcac
 15
 UACAGUAC m8a Disrupted -0.514000 -0.170000 No effect
hsa-miR-300 ttcCTTGTATtgtatgcac
 16
 UAUACAAG m7b (m6b->m7b) -0.022000 -0.128000 -1.870000
hsa-miR-338-5p ttccttgTATTGTatgcac
 0 AACAAUAU m6b Created no TS -0.023000 -0.120000
hsa-miR-381 ttcCTTGTATtgtatgcac
 16
 UAUACAAG m7b (m6b->m7b) -0.015000 -0.102000 -0.830000
hsa-miR-4666a-3p ttccttgtATTGTATGcac
 11
 CAUACAAU m8a Created 0.014000 -0.034000 -0.010000
hsa-miR-101-3p ttccttGTACTGTAtgcac
 15
 UACAGUAC m8a Disrupted -0.514000 -0.170000 No effect
hsa-miR-300 ttcCTTGTATtgtatgcac
 16
 UAUACAAG m7b (m6b->m7b) -0.022000 -0.128000 -1.870000
hsa-miR-338-5p ttccttgTATTGTatgcac
 0 AACAAUAU m6b Created no TS -0.023000 -0.120000
hsa-miR-381 ttcCTTGTATtgtatgcac
 16
 UAUACAAG m7b (m6b->m7b) -0.015000 -0.102000 -0.830000
hsa-miR-4666a-3p ttccttgtATTGTATGcac
 11
 CAUACAAU m8a Created 0.014000 -0.034000 -0.010000
hsa-miR-101-3p ttccttGTACTGTAtgcac
 15
 UACAGUAC m8a Disrupted -0.514 -0.17 No effect
hsa-miR-300 ttcCTTGTATtgtatgcac
 0 UAUACAAG m7b (m6b->m7b) -0.022 -0.128 -1.87
hsa-miR-338-5p ttccttgTATTGTatgcac
 0 AACAAUAU m6b Created no TS -0.023 -0.12
hsa-miR-381 ttcCTTGTATtgtatgcac
 0 UAUACAAG m7b (m6b->m7b) -0.015 -0.102 -0.83
hsa-miR-4666a-3p ttccttgtATTGTATGcac
 0 CAUACAAU m8a Created 0.014 -0.034 -0.01

Mutation Mutation ID Sample Name Cancer Type
chr2:g.195735487A>G COSN1231137 HX13T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-1277-5p cagctacATATATTcatgt
 17
 AAAUAUAU m7b Disrupted 0.161000 0.094000 No effect
hsa-miR-3924 cagcTACATATattcatgt
 0 AUAUGUAU m7a Disrupted NA NA 0.010000
hsa-miR-4666a-5p cagctACATGTATtcatgt
 0 AUACAUGU m8a Created no TS -0.108000 No effect
hsa-miR-1277-5p cagctacATATATTcatgt
 17
 AAAUAUAU m7b Disrupted 0.161000 0.094000 No effect
hsa-miR-3924 cagcTACATATattcatgt
 0 AUAUGUAU m7a Disrupted NA NA 0.010000
hsa-miR-4666a-5p cagctACATGTATtcatgt
 0 AUACAUGU m8a Created no TS -0.108000 No effect
hsa-miR-1277-5p cagctacATATATTcatgt
 2
 AAAUAUAU m7b Disrupted 0.161 0.094 No effect
hsa-miR-3924 cagcTACATATattcatgt
 0 AUAUGUAU m7a Disrupted NA NA 0.01
hsa-miR-4666a-5p cagctACATGTATtcatgt
 0 AUACAUGU m8a Created no TS -0.108 No effect

Mutation Mutation ID Sample Name Cancer Type
chr2:g.195736230G>C COSN8608282 J90_T [lung][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3622a-5p ttgGTGCCTGatagggatt
 0 CAGGCACG m7a (m7a->m6a) NA NA -0.760000
hsa-miR-4269 ttgGTGCCTGatagggatt
 6
 GCAGGCAC m7b (m7b->m6b) -0.304000 -0.133000 6.010000
hsa-miR-4514 ttggTGCCTGatagggatt
 6
 ACAGGCAG m6b Disrupted -0.133000 -0.125000 No effect
hsa-miR-454-5p ttggtgcctGATAGGGatt
 3
 ACCCUAUC m7b (m7b->m6c) -0.506000 -0.403000 0.010000

Mutation Mutation ID Sample Name Cancer Type
chr2:g.195736406T>C COSN9870707 C0021T [kidney][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-299-5p cagGTAAACCgtatttgaa
 0 UGGUUUAC m7b (m6b->m7b) no TS 0.025000 -1.680000
hsa-miR-582-5p caggtaAACTGTAtttgaa
 10
 UUACAGUU m7b Disrupted 0.003000 no TS No effect

Mutation Mutation ID Sample Name Cancer Type
chr2:g.195737117T>A COSN14512254 8034278 [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-186-5p gtattatctTTCTTTattt
 0 CAAAGAAU m6b Disrupted 0.106000 0.073000 0.010000
hsa-miR-4662a-3p gtattatCTATCTTTattt
 0 AAAGAUAG m8a Created -0.051000 -0.217000 -0.040000

Mutation Mutation ID Sample Name Cancer Type
chr2:g.195737227C>G COSN6162499 RK053_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-10b-3p atagacAATCTGaattcca
 11
 ACAGAUUC m6b Disrupted -0.211000 -0.146000 0.060000
hsa-miR-130a-5p atagacAATGTGAAttcca
 0 UUCACAUU m8a Created -0.167000 -0.310000 No effect
hsa-miR-219-5p ataGACAATCtgaattcca
 16
 UGAUUGUC m7b (m7b->m6b) -0.187000 no TS 0.350000
hsa-miR-23a-3p atagacAATGTGAattcca
 0 AUCACAUU m7b Created -0.130000 -0.252000 No effect
hsa-miR-23b-3p atagacAATGTGAattcca
 0 AUCACAUU m7b Created -0.130000 -0.262000 -0.010000
hsa-miR-23c atagacAATGTGAattcca
 0 AUCACAUU m7b Created -0.149000 -0.281000 No effect
hsa-miR-3942-3p atagacaATCTGAAttcca
 11
 UUUCAGAU m7b Disrupted -0.197000 -0.061000 0.080000
hsa-miR-4782-3p ataGACAATCtgaattcca
 16
 UGAUUGUC m7b (m7b->m6b) -0.205000 no TS 2.970000

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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