SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
RefSeq ID: NM_173514
Gene Symbol: SLC38A9
Description: Homo sapiens solute carrier family 38, member 9 (SLC38A9), mRNA.
Gene Location: chr5(-):54921675-55008163
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr5:g.55625912C>A COSN7947315 8062308 [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-489 aagtaATGTCAatgtaatc
 0 GUGACAUC m6b Disrupted -0.113000 no TS 0.080000

Mutation Mutation ID Sample Name Cancer Type
chr5:g.55625934A>G COSN2110805 RK159_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-138-1-3p tttgaagaaGAAGTAGaga
 2
 GCUACUUC m7b (m6b->m7b) -0.101000 -0.358000 -0.990000
hsa-miR-3682-5p tttgaagaAGAAGTAGaga
 0 CUACUUCU m8a Created no TS -0.155000 -3.410000
hsa-miR-4659a-3p tttGAAGAAAaagtagaga
 3
 UUUCUUCU m7a (m7a->m6b) -0.114000 -0.174000 -0.010000
hsa-miR-4659b-3p tttGAAGAAAaagtagaga
 3
 UUUCUUCU m7a (m7a->m6b) -0.114000 -0.174000 -0.040000
hsa-miR-4778-3p tttGAAGAAGAagtagaga
 0 UCUUCUUC m8a Created no TS -0.576000 0.270000

Mutation Mutation ID Sample Name Cancer Type
chr5:g.55626145G>T COSN5077585 HX18T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-146a-3p tctcagggtTTCAGAGcag
 0 CCUCUGAA m7b (m6b->m7b) no TS -0.107000 -0.890000
hsa-miR-301a-5p tctcagggtGTCAGAGCag
 0 GCUCUGAC m8a (m8a->m7a) -0.154000 no TS -1.040000
hsa-miR-3620 tctCAGGGTGtcagagcag
 0 UCACCCUG m7b (m7b->m6c) -0.221000 no TS 7.400000
hsa-miR-3660 tctcagggTGTCAGagcag
 3
 ACUGACAG m6b Disrupted -0.071000 no TS 2.570000
hsa-miR-4526 tctcagggTGTCAGagcag
 3
 GCUGACAG m6b Disrupted -0.071000 no TS 2.870000

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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