SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database

Prediction criteria: TargetScan sites only     All 6mer or longer seed matches

RefSeq ID: NM_003057
Gene Symbol: SLC22A1
Description: Homo sapiens solute carrier family 22 (organic cation transporter), member 1 (SLC22A1), transcript variant 1, mRNA.
Gene Location: chr6(+):160542862-160579750
Browse Associations

Somatic mutations that impact miRNA target sites



Mutation Mutation ID Sample Name Cancer Type
chr6:g.160158599C>T COSN4857176 tumor_4121361 [haematopoietic_and_lymphoid_tissue][NS][lymphoid_neoplasm][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3913-3p gttttgcggTGATGTCgtg
0 AGACAUCA m7b (m6c->m7b) no TS -0.113000 -1.269000
hsa-miR-499a-3p gttttgcgGTGATGTcgtg
0 AACAUCAC m7b Created no TS -0.101000 -6.750000
hsa-miR-499b-3p gttttgcgGTGATGTcgtg
0 AACAUCAC m7b Created no TS -0.101000 -10.990000

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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