SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_005628 |
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Gene Symbol: | SLC1A5 |
Description: | Homo sapiens solute carrier family 1 (neutral amino acid transporter), member 5 (SLC1A5), transcript variant 2, mRNA. |
Gene Location: | chr19(-):47278139-47291842 |
Browse Associations |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr19:g.46775154G>T | COSN6145609 | RK308_C01 | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-361-3p |
ccaCTGGGGGgatgttaca |
0 | UCCCCCAG | m7b | (m7b->m6c) | -0.589000 | -0.382000 |
1.120000 |
hsa-miR-499a-3p |
ccactgggGTGATGTTaca |
0 | AACAUCAC | m8a | Created | no TS | -0.098000 |
-3.060000 |
hsa-miR-499b-3p |
ccactgggGTGATGTTaca |
0 | AACAUCAC | m8a | Created | no TS | -0.098000 |
-1.950000 |
Location | SNP ID | Ancestral Allele |
Allele | miR ID | Conservation | miRSite | FuncClass | Validation | context+ score change |
---|---|---|---|---|---|---|---|---|---|
46775158 | rs113044612 | G | G |
hsa-miR-194-3p hsa-miR-361-3p |
0 |
CCCACTGggggga cccaCTGGGGGga |
Disrupted Disrupted |
N N |
-0.111 -0.207 |
A |
hsa-miR-1296-3p hsa-miR-4727-3p |
0 |
CCCACTAggggga CCCACTAggggga |
Created Created |
N N |
-0.195 -0.115 |