SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database

Prediction criteria: TargetScan sites only     All 6mer or longer seed matches

RefSeq ID: NM_194255
Gene Symbol: SLC19A1
Description: Homo sapiens solute carrier family 19 (folate transporter), member 1 (SLC19A1), transcript variant 2, mRNA.
Gene Location: chr21(-):46934628-46962385
Browse Associations

Somatic mutations that impact miRNA target sites



Mutation Mutation ID Sample Name Cancer Type
chr21:g.45514911G>A COSN6562357 ICGC_MB53 [central_nervous_system][brain][primitive_neuroectodermal_tumour-medulloblastoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-4734 ggtcaCCGCAGacgtgctg
0 GCUGCGGG m6b Created no TS -0.162000 -0.190000


Mutation Mutation ID Sample Name Cancer Type
chr21:g.45514912C>T COSN6691154 CHC197T [liver][NS][carcinoma][hepatocellular_carcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr21:g.45515052G>A SLC19A1_E7_UTR_3 SJLGG033_D [central_nervous_system][brain][glioma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-1224-5p ctgGTCCTCAgagctggtt
0 GUGAGGAC m7b (m6c->m7b) -0.089 -0.194 No effect
hsa-miR-3131 ctgGTCCTCGgagctggtt
0 UCGAGGAC m7b (m7b->m6c) -0.17 no TS -1.6
hsa-miR-3921 ctggtcCTCAGAGctggtt
0 UCUCUGAG m7b Created no TS -0.06 No effect
hsa-miR-4653-5p ctggtcCTCAGAGctggtt
0 UCUCUGAG m7b Created no TS -0.041 No effect
hsa-miR-611 ctgGTCCTCGgagctggtt
0 GCGAGGAC m7b (m7b->m6c) -0.179 no TS No effect

Mutation Mutation ID Sample Name Cancer Type
chr21:g.45515104A>C COSN5988157 RK101_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-1273f agCCATCTCCggttggcgg
0 GGAGAUGG m8a (m7b->m8a) -0.215000 -0.077000 -0.920000
hsa-miR-4324 agccaTCTCAGGttggcgg
0 CCCUGAGA m7b Disrupted -0.129000 no TS No effect

Mutation Mutation ID Sample Name Cancer Type
chr21:g.45515182A>T COSN1257698 HCC24T [liver][NS][carcinoma][hepatocellular_carcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-382-3p ttttttGAATGATgctttt
0 AAUCAUUC m7b Created no TS -0.135000 -4.380000
hsa-miR-4272 ttttTTGAATGatgctttt
0 CAUUCAAC m7a Created NA NA -3.010000
hsa-miR-382-3p ttttttGAATGATgctttt
0 AAUCAUUC m7b Created no TS -0.135000 -4.380000
hsa-miR-4272 ttttTTGAATGatgctttt
0 CAUUCAAC m7a Created NA NA -3.010000
hsa-miR-382-3p ttttttGAATGATgctttt
0 AAUCAUUC m7b Created no TS -0.135000 -4.380000
hsa-miR-4272 ttttTTGAATGatgctttt
0 CAUUCAAC m7a Created NA NA -3.010000
hsa-miR-382-3p ttttttGAATGATgctttt
0 AAUCAUUC m7b Created no TS -0.135 -4.38
hsa-miR-4272 ttttTTGAATGatgctttt
0 CAUUCAAC m7a Created NA NA -3.01

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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