SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_194255 |
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Gene Symbol: | SLC19A1 |
Description: | Homo sapiens solute carrier family 19 (folate transporter), member 1 (SLC19A1), transcript variant 2, mRNA. |
Gene Location: | chr21(-):46934628-46962385 |
Browse Associations |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr21:g.45514911G>A | COSN6562357 | ICGC_MB53 | [central_nervous_system][brain][primitive_neuroectodermal_tumour-medulloblastoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-4734 |
ggtcaCCGCAGacgtgctg |
0 | GCUGCGGG | m6b | Created | no TS | -0.162000 |
-0.190000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr21:g.45514912C>T | COSN6691154 | CHC197T | [liver][NS][carcinoma][hepatocellular_carcinoma] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr21:g.45515052G>A | SLC19A1_E7_UTR_3 | SJLGG033_D | [central_nervous_system][brain][glioma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-1224-5p |
ctgGTCCTCAgagctggtt |
0 | GUGAGGAC | m7b | (m6c->m7b) | -0.089 | -0.194 | No effect |
hsa-miR-3131 |
ctgGTCCTCGgagctggtt |
0 | UCGAGGAC | m7b | (m7b->m6c) | -0.17 | no TS |
-1.6 |
hsa-miR-3921 |
ctggtcCTCAGAGctggtt |
0 | UCUCUGAG | m7b | Created | no TS | -0.06 | No effect |
hsa-miR-4653-5p |
ctggtcCTCAGAGctggtt |
0 | UCUCUGAG | m7b | Created | no TS | -0.041 | No effect |
hsa-miR-611 |
ctgGTCCTCGgagctggtt |
0 | GCGAGGAC | m7b | (m7b->m6c) | -0.179 | no TS | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr21:g.45515104A>C | COSN5988157 | RK101_C01 | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-1273f |
agCCATCTCCggttggcgg |
0 | GGAGAUGG | m8a | (m7b->m8a) | -0.215000 | -0.077000 |
-0.920000 |
hsa-miR-4324 |
agccaTCTCAGGttggcgg |
0 | CCCUGAGA | m7b | Disrupted | -0.129000 | no TS | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr21:g.45515182A>T | COSN1257698 | HCC24T | [liver][NS][carcinoma][hepatocellular_carcinoma] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-382-3p |
ttttttGAATGATgctttt |
0 | AAUCAUUC | m7b | Created | no TS | -0.135000 |
-4.380000 |
hsa-miR-4272 |
ttttTTGAATGatgctttt |
0 | CAUUCAAC | m7a | Created | NA | NA |
-3.010000 |
hsa-miR-382-3p |
ttttttGAATGATgctttt |
0 | AAUCAUUC | m7b | Created | no TS | -0.135000 |
-4.380000 |
hsa-miR-4272 |
ttttTTGAATGatgctttt |
0 | CAUUCAAC | m7a | Created | NA | NA |
-3.010000 |
hsa-miR-382-3p |
ttttttGAATGATgctttt |
0 | AAUCAUUC | m7b | Created | no TS | -0.135000 |
-4.380000 |
hsa-miR-4272 |
ttttTTGAATGatgctttt |
0 | CAUUCAAC | m7a | Created | NA | NA |
-3.010000 |
hsa-miR-382-3p |
ttttttGAATGATgctttt |
0 | AAUCAUUC | m7b | Created | no TS | -0.135 |
-4.38 |
hsa-miR-4272 |
ttttTTGAATGatgctttt |
0 | CAUUCAAC | m7a | Created | NA | NA |
-3.01 |