SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
RefSeq ID: NM_020808
Gene Symbol: SIPA1L2
Description: Homo sapiens signal-induced proliferation-associated 1 like 2 (SIPA1L2), mRNA.
Gene Location: chr1(-):232533711-232651243
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr1:g.232398212A>C COSN7986989 PCSI_0048_Pa_P_526 [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-18a-5p agcttatttCACCTTAaat
 0 UAAGGUGC m7a (m6a->m7a) no TS -0.177000 -7.820000
hsa-miR-18b-5p agcttatttCACCTTAaat
 0 UAAGGUGC m7a (m6a->m7a) no TS -0.177000 -4.310000
hsa-miR-4735-3p agcttatttCACCTTaaat
 0 AAAGGUGC m6b Created no TS -0.184000 -0.800000

Mutation Mutation ID Sample Name Cancer Type
chr1:g.232398474A>G COSN15421578 AOCS-139-19-0 [ovary][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-1208 tgaatattAACAGTGttct
 14
 UCACUGUU m7b Disrupted -0.369000 -0.144000 0.010000
hsa-miR-2053 tgaatATTAACAgtgttct
 12
 GUGUUAAU m7b Disrupted -0.056000 no TS -1.070000
hsa-miR-569 tgaatATTAACagtgttct
 12
 AGUUAAUG m6b Disrupted 0.005000 no TS 0.010000
hsa-miR-1208 tgaatattAACAGTGttct
 14
 UCACUGUU m7b Disrupted -0.369000 -0.144000 0.010000
hsa-miR-2053 tgaatATTAACAgtgttct
 12
 GUGUUAAU m7b Disrupted -0.056000 no TS -1.070000
hsa-miR-569 tgaatATTAACagtgttct
 12
 AGUUAAUG m6b Disrupted 0.005000 no TS 0.010000
hsa-miR-1208 tgaatattAACAGTGttct
 14
 UCACUGUU m7b Disrupted -0.369000 -0.144000 0.010000
hsa-miR-2053 tgaatATTAACAgtgttct
 12
 GUGUUAAU m7b Disrupted -0.056000 no TS -1.070000
hsa-miR-569 tgaatATTAACagtgttct
 12
 AGUUAAUG m6b Disrupted 0.005000 no TS 0.010000
hsa-miR-1208 tgaatattAACAGTGttct
 14
 UCACUGUU m7b Disrupted -0.369000 -0.144000 0.010000
hsa-miR-2053 tgaatATTAACAgtgttct
 12
 GUGUUAAU m7b Disrupted -0.056000 no TS -1.070000
hsa-miR-569 tgaatATTAACagtgttct
 12
 AGUUAAUG m6b Disrupted 0.005000 no TS 0.010000

Mutation Mutation ID Sample Name Cancer Type
chr1:g.232398536G>T COSN7208195 8034291 [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-4539 ttaacactAGTTCAGatgc
 2
 GCUGAACU m7b Disrupted -0.224000 no TS 0.060000

Mutation Mutation ID Sample Name Cancer Type
chr1:g.232399030G>A COSN6447482 CHC205T [liver][NS][carcinoma][hepatocellular_carcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change

No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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