SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database

Prediction criteria: TargetScan sites only     All 6mer or longer seed matches

RefSeq ID: NM_006304
Gene Symbol: SHFM1
Description: Homo sapiens split hand/foot malformation (ectrodactyly) type 1 (SHFM1), mRNA.
Gene Location: chr7(-):96318078-96339203
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Somatic mutations that impact miRNA target sites



Mutation Mutation ID Sample Name Cancer Type
chr7:g.96688784A>G COSN2245639 RK034_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-4699-3p acacaaaaAGTAAATgttt
0 AAUUUACU m7b Created no TS -0.141000 3.520000
hsa-miR-4729 acacaaaaaATAAATGttt
0 UCAUUUAU m7b (m7b->m6b) -0.175000 no TS -0.320000
hsa-miR-5003-3p acacaAAAAGTAaatgttt
0 UACUUUUC m7a Created no TS -0.041000 1.400000
hsa-miR-4699-3p acacaaaaAGTAAATgttt
0 AAUUUACU m7b Created no TS -0.141 3.52
hsa-miR-4729 acacaaaaaATAAATGttt
0 UCAUUUAU m7b (m7b->m6b) -0.175 no TS -0.32
hsa-miR-5003-3p acacaAAAAGTAaatgttt
0 UACUUUUC m7a Created no TS -0.041 1.4

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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