SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_006304 |
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Gene Symbol: | SHFM1 |
Description: | Homo sapiens split hand/foot malformation (ectrodactyly) type 1 (SHFM1), mRNA. |
Gene Location: | chr7(-):96318078-96339203 |
Browse Associations | |
Browse Pathways |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
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chr7:g.96688784A>G | COSN2245639 | RK034_C01 | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-4699-3p |
acacaaaaAGTAAATgttt |
0 | AAUUUACU | m7b | Created | no TS | -0.141000 |
3.520000 |
hsa-miR-4729 |
acacaaaaaATAAATGttt |
0 | UCAUUUAU | m7b | (m7b->m6b) | -0.175000 | no TS |
-0.320000 |
hsa-miR-5003-3p |
acacaAAAAGTAaatgttt |
0 | UACUUUUC | m7a | Created | no TS | -0.041000 |
1.400000 |
hsa-miR-4699-3p |
acacaaaaAGTAAATgttt |
0 | AAUUUACU | m7b | Created | no TS | -0.141 |
3.52 |
hsa-miR-4729 |
acacaaaaaATAAATGttt |
0 | UCAUUUAU | m7b | (m7b->m6b) | -0.175 | no TS |
-0.32 |
hsa-miR-5003-3p |
acacaAAAAGTAaatgttt |
0 | UACUUUUC | m7a | Created | no TS | -0.041 |
1.4 |