SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database

Prediction criteria: TargetScan sites only     All 6mer or longer seed matches

RefSeq ID: NM_147156
Gene Symbol: SGMS1
Description: Homo sapiens sphingomyelin synthase 1 (SGMS1), mRNA.
Gene Location: chr10(-):52065344-52383737
Browse Associations
Browse Pathways

Somatic mutations that impact miRNA target sites



Mutation Mutation ID Sample Name Cancer Type
chr10:g.50306646G>A COSN15004925 LP6007414-DNA_A02 [oesophagus][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-1250 tgttGCACCGatattcaaa
9
ACGGUGCU m6b Disrupted -0.260000 no TS 1.650000

Mutation Mutation ID Sample Name Cancer Type
chr10:g.50307039A>G COSN5251639 HCC83 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-1255b-2-3p tatctttcAGTGGTTacct
0 AACCACUU m7a Created NA NA -0.010000
hsa-miR-181a-2-3p tatcttTCAGTGGTtacct
0 ACCACUGA m8a Created no TS -0.265000 -0.580000
hsa-miR-4766-5p tatCTTTCAGtggttacct
0 UCUGAAAG m7b (m6c->m7b) no TS -0.156000 -1.270000
hsa-miR-1255b-2-3p tatctttcAGTGGTTacct
0 AACCACUU m7a Created NA NA -0.010000
hsa-miR-181a-2-3p tatcttTCAGTGGTtacct
0 ACCACUGA m8a Created no TS -0.265000 -0.580000
hsa-miR-4766-5p tatCTTTCAGtggttacct
0 UCUGAAAG m7b (m6c->m7b) no TS -0.156000 -1.270000

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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