SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
  Home Search Help Download  

PolymiRTS Database

Prediction criteria: TargetScan sites only     All 6mer or longer seed matches

RefSeq ID: NM_000231
Gene Symbol: SGCG
Description: Homo sapiens sarcoglycan, gamma (35kDa dystrophin-associated glycoprotein) (SGCG), mRNA.
Gene Location: chr13(+):23755059-23899304
Browse Associations
Browse Pathways

Somatic mutations that impact miRNA target sites



Mutation Mutation ID Sample Name Cancer Type
chr13:g.23325022T>C COSN6224274 RK154_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-490-3p gcaagtaagCCAGGTTtca
0 CAACCUGG m7b (m6c->m7b) no TS -0.225000 -1.850000

Mutation Mutation ID Sample Name Cancer Type
chr13:g.23325052G>T COSN6619835 CHC433T [liver][NS][carcinoma][hepatocellular_carcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-1323 tcaAGTTTTGAagggaatt
2
UCAAAACU m8a Disrupted -0.250000 no TS 3.120000
hsa-miR-548a-3p tcaAGTTTTGaagggaatt
0 CAAAACUG m7a (m7a->m6a) NA NA -3.750000
hsa-miR-548ac tcaaGTTTTTaagggaatt
0 CAAAAACC m6b Created no TS 0.010000 -1.840000
hsa-miR-548ae tcaAGTTTTTaagggaatt
0 CAAAAACU m7b (m6b->m7b) no TS -0.130000 -4.530000
hsa-miR-548ah-3p tcaAGTTTTTaagggaatt
0 CAAAAACU m7b (m6b->m7b) no TS -0.109000 -1.480000
hsa-miR-548aj-3p tcaAGTTTTTAagggaatt
0 UAAAAACU m8a Created no TS -0.130000 -3.154000
hsa-miR-548am-3p tcaAGTTTTTaagggaatt
0 CAAAAACU m7b (m6b->m7b) no TS -0.109000 -1.490000
hsa-miR-548aq-3p tcaAGTTTTTaagggaatt
0 CAAAAACU m7b (m6b->m7b) no TS -0.130000 -3.520000
hsa-miR-548d-3p tcaaGTTTTTaagggaatt
0 CAAAAACC m6b Created no TS 0.003000 -1.950000
hsa-miR-548e tcaAGTTTTTaagggaatt
0 AAAAACUG m7a (m6a->m7a) NA NA -2.090000
hsa-miR-548f tcaAGTTTTTaagggaatt
0 AAAAACUG m7a (m6a->m7a) NA NA -3.760000
hsa-miR-548h-3p tcaaGTTTTTaagggaatt
0 CAAAAACC m6b Created no TS 0.013000 -1.200000
hsa-miR-548o-3p tcaAGTTTTGaagggaatt
2
CCAAAACU m7b (m7b->m6b) -0.208000 no TS -2.040000
hsa-miR-548x-3p tcaAGTTTTTAagggaatt
0 UAAAAACU m8a Created no TS -0.130000 -4.521000
hsa-miR-548z tcaaGTTTTTaagggaatt
0 CAAAAACC m6b Created no TS 0.013000 -1.200000

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



Germline mutations in target sites of miRNAs in somatic mutation table

Location SNP ID Ancestral
Allele
Allele miR ID Conservation miRSite FuncClass Validation context+
score change
23325046 rs7329620 A A hsa-miR-1323
hsa-miR-548o-3p
hsa-miR-5582-3p
2
2
3
ttttcaAGTTTTG
ttttcaAGTTTTG
ttttcAAGTTTTg
Disrupted
Disrupted
Disrupted
N
N
N
-0.197
-0.169
-0.025

Genome Browser