SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_000231 |
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Gene Symbol: | SGCG |
Description: | Homo sapiens sarcoglycan, gamma (35kDa dystrophin-associated glycoprotein) (SGCG), mRNA. |
Gene Location: | chr13(+):23755059-23899304 |
Browse Associations | |
Browse Pathways |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr13:g.23325022T>C | COSN6224274 | RK154_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-490-3p |
gcaagtaagCCAGGTTtca |
0 | CAACCUGG | m7b | (m6c->m7b) | no TS | -0.225000 |
-1.850000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr13:g.23325052G>T | COSN6619835 | CHC433T | [liver][NS][carcinoma][hepatocellular_carcinoma] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-1323 |
tcaAGTTTTGAagggaatt |
2 |
UCAAAACU | m8a | Disrupted | -0.250000 | no TS |
3.120000 |
hsa-miR-548a-3p |
tcaAGTTTTGaagggaatt |
0 | CAAAACUG | m7a | (m7a->m6a) | NA | NA |
-3.750000 |
hsa-miR-548ac |
tcaaGTTTTTaagggaatt |
0 | CAAAAACC | m6b | Created | no TS | 0.010000 |
-1.840000 |
hsa-miR-548ae |
tcaAGTTTTTaagggaatt |
0 | CAAAAACU | m7b | (m6b->m7b) | no TS | -0.130000 |
-4.530000 |
hsa-miR-548ah-3p |
tcaAGTTTTTaagggaatt |
0 | CAAAAACU | m7b | (m6b->m7b) | no TS | -0.109000 |
-1.480000 |
hsa-miR-548aj-3p |
tcaAGTTTTTAagggaatt |
0 | UAAAAACU | m8a | Created | no TS | -0.130000 |
-3.154000 |
hsa-miR-548am-3p |
tcaAGTTTTTaagggaatt |
0 | CAAAAACU | m7b | (m6b->m7b) | no TS | -0.109000 |
-1.490000 |
hsa-miR-548aq-3p |
tcaAGTTTTTaagggaatt |
0 | CAAAAACU | m7b | (m6b->m7b) | no TS | -0.130000 |
-3.520000 |
hsa-miR-548d-3p |
tcaaGTTTTTaagggaatt |
0 | CAAAAACC | m6b | Created | no TS | 0.003000 |
-1.950000 |
hsa-miR-548e |
tcaAGTTTTTaagggaatt |
0 | AAAAACUG | m7a | (m6a->m7a) | NA | NA |
-2.090000 |
hsa-miR-548f |
tcaAGTTTTTaagggaatt |
0 | AAAAACUG | m7a | (m6a->m7a) | NA | NA |
-3.760000 |
hsa-miR-548h-3p |
tcaaGTTTTTaagggaatt |
0 | CAAAAACC | m6b | Created | no TS | 0.013000 |
-1.200000 |
hsa-miR-548o-3p |
tcaAGTTTTGaagggaatt |
2 |
CCAAAACU | m7b | (m7b->m6b) | -0.208000 | no TS |
-2.040000 |
hsa-miR-548x-3p |
tcaAGTTTTTAagggaatt |
0 | UAAAAACU | m8a | Created | no TS | -0.130000 |
-4.521000 |
hsa-miR-548z |
tcaaGTTTTTaagggaatt |
0 | CAAAAACC | m6b | Created | no TS | 0.013000 |
-1.200000 |
Location | SNP ID | Ancestral Allele |
Allele | miR ID | Conservation | miRSite | FuncClass | Validation | context+ score change |
---|---|---|---|---|---|---|---|---|---|
23325046 | rs7329620 | A | A |
hsa-miR-1323 hsa-miR-548o-3p hsa-miR-5582-3p |
2 2 3 |
ttttcaAGTTTTG ttttcaAGTTTTG ttttcAAGTTTTg |
Disrupted Disrupted Disrupted |
N N N |
-0.197 -0.169 -0.025 |