SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_153618 |
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Gene Symbol: | SEMA6D |
Description: | Homo sapiens sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D (SEMA6D), transcript variant 7, mRNA. |
Gene Location: | chr15(+):48010685-48066420 |
Browse Associations | |
Browse Pathways |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr15:g.47771810G>T | COSN5398008 | RK088_C01 | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-4422 |
ttcccatgtTGCTTTatcc |
19 |
AAAAGCAU | m6b | Created | -0.258000 | -0.318000 |
-1.550000 |
hsa-miR-449b-3p |
ttcccaTGTGGCTttatcc |
16 |
CAGCCACA | m7b | Disrupted | -0.244000 | no TS |
4.380000 |
hsa-miR-4717-3p |
ttcCCATGTGgctttatcc |
7 |
ACACAUGG | m7b | (m7b->m6b) | -0.130000 | 0.022000 |
0.330000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr15:g.47771811G>T | COSN5398009 | RK088_C01 | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-3617 |
tcccatgTGTCTTTatcct |
0 | AAAGACAU | m7a | Created | NA | NA |
-0.240000 |
hsa-miR-449b-3p |
tcccaTGTGGCTttatcct |
16 |
CAGCCACA | m7b | Disrupted | -0.244000 | no TS |
4.380000 |
hsa-miR-4643 |
tccCATGTGTCtttatcct |
0 | GACACAUG | m8a | Created | -0.328000 | -0.454000 | No effect |
hsa-miR-4717-3p |
tcCCATGTGTctttatcct |
7 |
ACACAUGG | m8a | (m7a->m8a) | -0.130000 | -0.159000 |
-1.200000 |
hsa-miR-548u |
tcccatgtGTCTTTatcct |
0 | CAAAGACU | m6b | Created | no TS | -0.054000 |
-0.020000 |
hsa-miR-641 |
tcccatgTGTCTTTatcct |
0 | AAAGACAU | m7a | Created | NA | NA |
-5.030000 |
hsa-miR-642a-3p |
tcccATGTGTCTttatcct |
0 | AGACACAU | m8a | Created | no TS | -0.148000 |
-1.110000 |
hsa-miR-642b-3p |
tcccATGTGTCTttatcct |
0 | AGACACAU | m8a | Created | no TS | -0.148000 |
-1.250000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr15:g.47771869G>T | COSN8745544 | AOCS-119-3-9 | [ovary][NS][other][neoplasm] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr15:g.47772175T>A | COSN1677699 | RK027_C01 | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-5580-3p |
acattttaATATGTatgca |
13 |
CACAUAUG | m6b | Disrupted | -0.059000 | -0.048000 | No effect |
hsa-miR-5580-3p |
acattttaATATGTatgca |
0 | CACAUAUG | m6b | Disrupted | -0.059 | -0.048 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr15:g.47772630A>C | COSN8174060 | PCSI_0224_Pa_P_526 | [pancreas][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-2054 |
tattcATTACAacttgtat |
9 |
CUGUAAUA | m6b | Created | -0.154000 | -0.119000 |
-0.010000 |
hsa-miR-382-5p |
tattcattACAACTTgtat |
0 | GAAGUUGU | m7b | Created | no TS | -0.060000 |
-0.130000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr15:g.47772804C>T | COSN8745545 | AOCS-055-1-7 | [ovary][NS][other][neoplasm] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-3175 |
gttcgttTCTCCCCcccca |
0 | CGGGGAGA | m7b | Created | no TS | -0.123000 |
0.880000 |
hsa-miR-4723-5p |
gttcgtttCTCCCCCccca |
0 | UGGGGGAG | m7b | Created | no TS | -0.175000 |
-2.400000 |
hsa-miR-5698 |
gttcgtttCTCCCCCccca |
0 | UGGGGGAG | m7b | Created | no TS | -0.175000 |
-0.660000 |
hsa-miR-625-5p |
gttcgtTTCCCCCccccca |
0 | AGGGGGAA | m7b | Disrupted | -0.084000 | no TS |
3.390000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr15:g.47773335G>T | COSN8745546 | AOCS-061-1-8 | [ovary][NS][other][neoplasm] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-4496 |
tcaaatgagGTTTCCTggg |
4 |
GAGGAAAC | m7b | (m7b->m6c) | 0.043000 | 0.043000 |
1.600000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr15:g.47773407C>T | COSN8174061 | PCSI_0083_Pa_P_526 | [pancreas][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-3157-5p |
aaccacttaTGGCTGAtga |
0 | UUCAGCCA | m7b | (m6c->m7b) | no TS | -0.184000 |
-3.870000 |
hsa-miR-4691-3p |
aaccacttaTGGCTGatga |
0 | CCAGCCAC | m6b | Created | no TS | -0.079000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr15:g.47774030A>G | COSN5398010 | RK102_C01 | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-4724-3p |
tgcaAAGGTAaacgcagat |
0 | GUACCUUC | m6b | Disrupted | -0.067000 | 0.021000 | No effect |