| SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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| RefSeq ID: | NM_003020 |
|---|---|
| Gene Symbol: | SCG5 |
| Description: | Homo sapiens secretogranin V (7B2 protein) (SCG5), transcript variant 1, mRNA. |
| Gene Location: | chr15(+):32933869-32989298 |
| Browse Associations | |
| Mutation | Mutation ID | Sample Name | Cancer Type | |||||
|---|---|---|---|---|---|---|---|---|
| chr15:g.32696831A>G | COSN5753792 | HCC161 | [liver][NS][carcinoma][NS] | |||||
| miRNA Targets Table | ||||||||
| miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
| hsa-miR-10b-3p |
taaaatgtGAATCTGcaat |
1 |
ACAGAUUC | m7b | Disrupted | -0.202000 | no TS |
1.120000 |
| hsa-miR-130a-5p |
taaAATGTGAAtctgcaat |
1 |
UUCACAUU | m8a | Disrupted | -0.534000 | -0.264000 |
-3.000000 |
| hsa-miR-23a-3p |
taaAATGTGAatctgcaat |
1 |
AUCACAUU | m7b | (m7b->m6b) | -0.503000 | -0.264000 |
0.480000 |
| hsa-miR-23b-3p |
taaAATGTGAatctgcaat |
1 |
AUCACAUU | m7b | (m7b->m6b) | -0.503000 | -0.264000 |
0.820000 |
| hsa-miR-23c |
taaAATGTGAatctgcaat |
1 |
AUCACAUU | m7b | (m7b->m6b) | -0.523000 | -0.274000 |
-1.060000 |
| hsa-miR-10b-3p |
taaaatgtGAATCTGcaat |
1 |
ACAGAUUC | m7b | Disrupted | -0.202000 | no TS |
1.120000 |
| hsa-miR-130a-5p |
taaAATGTGAAtctgcaat |
1 |
UUCACAUU | m8a | Disrupted | -0.534000 | -0.264000 |
-3.000000 |
| hsa-miR-23a-3p |
taaAATGTGAatctgcaat |
1 |
AUCACAUU | m7b | (m7b->m6b) | -0.503000 | -0.264000 |
0.480000 |
| hsa-miR-23b-3p |
taaAATGTGAatctgcaat |
1 |
AUCACAUU | m7b | (m7b->m6b) | -0.503000 | -0.264000 |
0.820000 |
| hsa-miR-23c |
taaAATGTGAatctgcaat |
1 |
AUCACAUU | m7b | (m7b->m6b) | -0.523000 | -0.274000 |
-1.060000 |