SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_001172509 |
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Gene Symbol: | SATB2 |
Description: | Homo sapiens SATB homeobox 2 (SATB2), transcript variant 1, mRNA. |
Gene Location: | chr2(-):200134222-200322819 |
Browse Associations |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr2:g.199269603A>G | COSN1818299 | RK082_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-29a-5p |
tgtAAATCAGctatctttg |
14 |
ACUGAUUU | m7b | (m6c->m7b) | -0.028000 | -0.198000 |
-0.480000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr2:g.199269883C>G | COSN6163772 | RK128_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-34a-5p |
tttCACTGCCAagtttgca |
16 |
UGGCAGUG | m8a | Disrupted | -0.657000 | -0.215000 |
0.030000 |
|
hsa-miR-34c-5p |
tttCACTGCCaagtttgca |
16 |
AGGCAGUG | m7b | (m7b->m6c) | -0.678000 | -0.225000 |
0.550000 |
|
hsa-miR-449a |
tttCACTGCCAagtttgca |
16 |
UGGCAGUG | m8a | Disrupted | -0.697000 | -0.234000 |
0.280000 |
|
hsa-miR-449b-5p |
tttCACTGCCaagtttgca |
16 |
AGGCAGUG | m7b | (m7b->m6c) | -0.697000 | -0.234000 |
0.720000 |
|
hsa-miR-548au-3p |
tttcACTGCCAagtttgca |
16 |
UGGCAGUU | m7a | Disrupted | -0.182000 | no TS | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr2:g.199269913G>C | COSN9303395 | AOCS-142-3-5 | [ovary][NS][other][neoplasm] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-374c-3p |
caatGCTAAGTcttgcctt |
16 |
CACUUAGC | m7b | Disrupted | -0.229000 | no TS |
0.070000 |
|
hsa-miR-4696 |
caatgctaaGTCTTGCctt |
18 |
UGCAAGAC | m7b | (m7b->m6b) | -0.387000 | -0.137000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr2:g.199270008C>A | COSN14587576 | 8070202 | [pancreas][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-182-5p |
tgattTTGCCAAgctctta |
15 |
UUUGGCAA | m7b | Disrupted | -0.117000 | no TS |
0.050000 |
|
hsa-miR-4453 |
tgattttgCCAAGCTCtta |
18 |
GAGCUUGG | m8a | Disrupted | -0.239000 | -0.074000 |
2.230000 |
|
hsa-miR-4470 |
tgatTTTGCCAagctctta |
13 |
UGGCAAAC | m7a | Disrupted | -0.062000 | no TS |
1.030000 |
|
hsa-miR-450b-5p |
tgattTTGCAAAgctctta |
14 |
UUUUGCAA | m7b | Created | -0.031000 | -0.112000 |
-0.010000 |
|
hsa-miR-4538 |
tgattttgCCAAGCTCtta |
18 |
GAGCUUGG | m8a | Disrupted | -0.215000 | -0.077000 | No effect | |
hsa-miR-518a-5p |
tgatTTTGCAaagctctta |
1 |
CUGCAAAG | m6b | Created | -0.311000 | -0.327000 | No effect | |
hsa-miR-527 |
tgatTTTGCAaagctctta |
1 |
CUGCAAAG | m6b | Created | -0.311000 | -0.327000 | No effect | |
hsa-miR-548aj-5p |
tgaTTTTGCAaagctctta |
0 | UGCAAAAG | m7a | (m6b->m7a) | no TS | 0.008000 |
-0.550000 |
|
hsa-miR-548aw |
tgaTTTTGCAaagctctta |
1 |
GUGCAAAA | m7b | (m6c->m7b) | -0.017000 | -0.115000 |
-1.050000 |
|
hsa-miR-548g-5p |
tgaTTTTGCAaagctctta |
0 | UGCAAAAG | m7a | (m6b->m7a) | no TS | 0.008000 |
-0.550000 |
|
hsa-miR-548x-5p |
tgaTTTTGCAaagctctta |
0 | UGCAAAAG | m7a | (m6b->m7a) | no TS | 0.008000 |
-0.550000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr2:g.199270147C>A | COSN8608331 | 522_T | [lung][NS][carcinoma][squamous_cell_carcinoma] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-4476 |
cccatCCTTCCTatttctg |
0 | CAGGAAGG | m7b | Disrupted | -0.243000 | -0.012000 |
0.090000 |
|
hsa-miR-4533 |
cccaTCCTTCCtatttctg |
0 | UGGAAGGA | m7b | Disrupted | -0.134000 | -0.004000 |
0.110000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr2:g.199270171G>T | COSN8764718 | SS6003111 | [oesophagus][NS][carcinoma][adenocarcinoma] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-4724-5p |
tggttgttTTCAGTTagcc |
12 |
AACUGAAC | m7a | Created | -0.398000 | -0.398000 | No effect | |
hsa-miR-570-3p |
tggtTGTTTTCagttagcc |
0 | CGAAAACA | m7b | Created | no TS | -0.010000 |
-0.140000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr2:g.199270202G>A | COSN8608332 | 4095_T | [lung][NS][carcinoma][squamous_cell_carcinoma] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-1272 |
gacataagCATCATatacc |
0 | GAUGAUGA | m6b | Created | no TS | -0.056000 | No effect | |
hsa-miR-1322 |
gacataaGCATCATatacc |
0 | GAUGAUGC | m7b | Created | no TS | -0.284000 |
-0.010000 |
|
hsa-miR-4757-3p |
gacataagCGTCATatacc |
5 |
CAUGACGU | m6b | Disrupted | -0.170000 | no TS |
0.600000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr2:g.199270927C>T | COSN6931958 | 8033414 | [pancreas][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-33a-3p |
ctaatcAAACATTttcagt |
13 |
CAAUGUUU | m7b | Disrupted | 0.322000 | 0.188000 |
0.150000 |
|
hsa-miR-3662 |
ctaatcaaaCATTTTCagt |
17 |
GAAAAUGA | m7a | (m7a->m6a) | 0.111000 | 0.111000 |
0.040000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr2:g.199271358A>G | COSN5494377 | RK125_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-4427 |
cgtTATTCAGtttgtcatt |
0 | UCUGAAUA | m7b | (m6c->m7b) | no TS | -0.028000 |
-0.130000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr2:g.199271964C>T | COSN8277243 | PCSI_0083_Pa_P_526 | [pancreas][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr2:g.199272003A>G | COSN1818300 | RK004_C01 | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-141-3p |
aagttCAGTGTTtccgaat |
0 | UAACACUG | m7b | Created | no TS | -0.149000 |
-0.510000 |
hsa-miR-200a-3p |
aagttCAGTGTTtccgaat |
0 | UAACACUG | m7b | Created | no TS | -0.149000 |
-2.120000 |
hsa-miR-200b-3p |
aagttCAGTATTtccgaat |
14 |
UAAUACUG | m7b | Disrupted | -0.109000 | no TS |
0.710000 |
hsa-miR-200c-3p |
aagttCAGTATTtccgaat |
14 |
UAAUACUG | m7b | Disrupted | -0.109000 | no TS |
0.040000 |
hsa-miR-4261 |
aagttcagTGTTTCCgaat |
0 | AGGAAACA | m7b | Created | no TS | -0.103000 | No effect |
hsa-miR-429 |
aagttCAGTATTtccgaat |
14 |
UAAUACUG | m7b | Disrupted | -0.109000 | no TS |
0.050000 |
hsa-miR-141-3p |
aagttCAGTGTTtccgaat |
0 | UAACACUG | m7b | Created | no TS | -0.149 |
-0.51 |
hsa-miR-200a-3p |
aagttCAGTGTTtccgaat |
0 | UAACACUG | m7b | Created | no TS | -0.149 |
-2.12 |
hsa-miR-200b-3p |
aagttCAGTATTtccgaat |
0 | UAAUACUG | m7b | Disrupted | -0.109 | no TS |
0.71 |
hsa-miR-200c-3p |
aagttCAGTATTtccgaat |
0 | UAAUACUG | m7b | Disrupted | -0.109 | no TS |
0.04 |
hsa-miR-4261 |
aagttcagTGTTTCCgaat |
0 | AGGAAACA | m7b | Created | no TS | -0.103 | No effect |
hsa-miR-429 |
aagttCAGTATTtccgaat |
0 | UAAUACUG | m7b | Disrupted | -0.109 | no TS |
0.05 |
Location | SNP ID | Ancestral Allele |
Allele | miR ID | Conservation | miRSite | FuncClass | Validation | context+ score change |
---|---|---|---|---|---|---|---|---|---|
199270659 | rs181632768 | A | A |
hsa-miR-4476 hsa-miR-6876-5p |
6 6 |
CTTCCTAtgagaa CTTCCTAtgagaa |
Disrupted Disrupted |
N N |
0.031 0.031 |
G |
hsa-miR-1229-3p hsa-miR-342-3p hsa-miR-513a-5p |
2 2 2 |
cttcctGTGAGAA cttccTGTGAGAa cttCCTGTGAgaa |
Created Created Created |
N N N |
0.003 0.007 -0.037 |