SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database

Prediction criteria: TargetScan sites only     All 6mer or longer seed matches

RefSeq ID: NM_001172509
Gene Symbol: SATB2
Description: Homo sapiens SATB homeobox 2 (SATB2), transcript variant 1, mRNA.
Gene Location: chr2(-):200134222-200322819
Browse Associations

Somatic mutations that impact miRNA target sites



Mutation Mutation ID Sample Name Cancer Type
chr2:g.199269603A>G COSN1818299 RK082_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-29a-5p tgtAAATCAGctatctttg
14
ACUGAUUU m7b (m6c->m7b) -0.028000 -0.198000 -0.480000

Mutation Mutation ID Sample Name Cancer Type
chr2:g.199269883C>G COSN6163772 RK128_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-34a-5p tttCACTGCCAagtttgca
16
UGGCAGUG m8a Disrupted -0.657000 -0.215000 0.030000
hsa-miR-34c-5p tttCACTGCCaagtttgca
16
AGGCAGUG m7b (m7b->m6c) -0.678000 -0.225000 0.550000
hsa-miR-449a tttCACTGCCAagtttgca
16
UGGCAGUG m8a Disrupted -0.697000 -0.234000 0.280000
hsa-miR-449b-5p tttCACTGCCaagtttgca
16
AGGCAGUG m7b (m7b->m6c) -0.697000 -0.234000 0.720000
hsa-miR-548au-3p tttcACTGCCAagtttgca
16
UGGCAGUU m7a Disrupted -0.182000 no TS No effect

Mutation Mutation ID Sample Name Cancer Type
chr2:g.199269913G>C COSN9303395 AOCS-142-3-5 [ovary][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-374c-3p caatGCTAAGTcttgcctt
16
CACUUAGC m7b Disrupted -0.229000 no TS 0.070000
hsa-miR-4696 caatgctaaGTCTTGCctt
18
UGCAAGAC m7b (m7b->m6b) -0.387000 -0.137000 No effect

Mutation Mutation ID Sample Name Cancer Type
chr2:g.199270008C>A COSN14587576 8070202 [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-182-5p tgattTTGCCAAgctctta
15
UUUGGCAA m7b Disrupted -0.117000 no TS 0.050000
hsa-miR-4453 tgattttgCCAAGCTCtta
18
GAGCUUGG m8a Disrupted -0.239000 -0.074000 2.230000
hsa-miR-4470 tgatTTTGCCAagctctta
13
UGGCAAAC m7a Disrupted -0.062000 no TS 1.030000
hsa-miR-450b-5p tgattTTGCAAAgctctta
14
UUUUGCAA m7b Created -0.031000 -0.112000 -0.010000
hsa-miR-4538 tgattttgCCAAGCTCtta
18
GAGCUUGG m8a Disrupted -0.215000 -0.077000 No effect
hsa-miR-518a-5p tgatTTTGCAaagctctta
1
CUGCAAAG m6b Created -0.311000 -0.327000 No effect
hsa-miR-527 tgatTTTGCAaagctctta
1
CUGCAAAG m6b Created -0.311000 -0.327000 No effect
hsa-miR-548aj-5p tgaTTTTGCAaagctctta
0 UGCAAAAG m7a (m6b->m7a) no TS 0.008000 -0.550000
hsa-miR-548aw tgaTTTTGCAaagctctta
1
GUGCAAAA m7b (m6c->m7b) -0.017000 -0.115000 -1.050000
hsa-miR-548g-5p tgaTTTTGCAaagctctta
0 UGCAAAAG m7a (m6b->m7a) no TS 0.008000 -0.550000
hsa-miR-548x-5p tgaTTTTGCAaagctctta
0 UGCAAAAG m7a (m6b->m7a) no TS 0.008000 -0.550000

Mutation Mutation ID Sample Name Cancer Type
chr2:g.199270147C>A COSN8608331 522_T [lung][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-4476 cccatCCTTCCTatttctg
0 CAGGAAGG m7b Disrupted -0.243000 -0.012000 0.090000
hsa-miR-4533 cccaTCCTTCCtatttctg
0 UGGAAGGA m7b Disrupted -0.134000 -0.004000 0.110000

Mutation Mutation ID Sample Name Cancer Type
chr2:g.199270171G>T COSN8764718 SS6003111 [oesophagus][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-4724-5p tggttgttTTCAGTTagcc
12
AACUGAAC m7a Created -0.398000 -0.398000 No effect
hsa-miR-570-3p tggtTGTTTTCagttagcc
0 CGAAAACA m7b Created no TS -0.010000 -0.140000

Mutation Mutation ID Sample Name Cancer Type
chr2:g.199270202G>A COSN8608332 4095_T [lung][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-1272 gacataagCATCATatacc
0 GAUGAUGA m6b Created no TS -0.056000 No effect
hsa-miR-1322 gacataaGCATCATatacc
0 GAUGAUGC m7b Created no TS -0.284000 -0.010000
hsa-miR-4757-3p gacataagCGTCATatacc
5
CAUGACGU m6b Disrupted -0.170000 no TS 0.600000

Mutation Mutation ID Sample Name Cancer Type
chr2:g.199270927C>T COSN6931958 8033414 [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-33a-3p ctaatcAAACATTttcagt
13
CAAUGUUU m7b Disrupted 0.322000 0.188000 0.150000
hsa-miR-3662 ctaatcaaaCATTTTCagt
17
GAAAAUGA m7a (m7a->m6a) 0.111000 0.111000 0.040000

Mutation Mutation ID Sample Name Cancer Type
chr2:g.199271358A>G COSN5494377 RK125_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-4427 cgtTATTCAGtttgtcatt
0 UCUGAAUA m7b (m6c->m7b) no TS -0.028000 -0.130000


Mutation Mutation ID Sample Name Cancer Type
chr2:g.199271964C>T COSN8277243 PCSI_0083_Pa_P_526 [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr2:g.199272003A>G COSN1818300 RK004_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-141-3p aagttCAGTGTTtccgaat
0 UAACACUG m7b Created no TS -0.149000 -0.510000
hsa-miR-200a-3p aagttCAGTGTTtccgaat
0 UAACACUG m7b Created no TS -0.149000 -2.120000
hsa-miR-200b-3p aagttCAGTATTtccgaat
14
UAAUACUG m7b Disrupted -0.109000 no TS 0.710000
hsa-miR-200c-3p aagttCAGTATTtccgaat
14
UAAUACUG m7b Disrupted -0.109000 no TS 0.040000
hsa-miR-4261 aagttcagTGTTTCCgaat
0 AGGAAACA m7b Created no TS -0.103000 No effect
hsa-miR-429 aagttCAGTATTtccgaat
14
UAAUACUG m7b Disrupted -0.109000 no TS 0.050000
hsa-miR-141-3p aagttCAGTGTTtccgaat
0 UAACACUG m7b Created no TS -0.149 -0.51
hsa-miR-200a-3p aagttCAGTGTTtccgaat
0 UAACACUG m7b Created no TS -0.149 -2.12
hsa-miR-200b-3p aagttCAGTATTtccgaat
0 UAAUACUG m7b Disrupted -0.109 no TS 0.71
hsa-miR-200c-3p aagttCAGTATTtccgaat
0 UAAUACUG m7b Disrupted -0.109 no TS 0.04
hsa-miR-4261 aagttcagTGTTTCCgaat
0 AGGAAACA m7b Created no TS -0.103 No effect
hsa-miR-429 aagttCAGTATTtccgaat
0 UAAUACUG m7b Disrupted -0.109 no TS 0.05

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



Germline mutations in target sites of miRNAs in somatic mutation table

Location SNP ID Ancestral
Allele
Allele miR ID Conservation miRSite FuncClass Validation context+
score change
199270659 rs181632768 A A hsa-miR-4476
hsa-miR-6876-5p
6
6
CTTCCTAtgagaa
CTTCCTAtgagaa
Disrupted
Disrupted
N
N
0.031
0.031
G hsa-miR-1229-3p
hsa-miR-342-3p
hsa-miR-513a-5p
2
2
2
cttcctGTGAGAA
cttccTGTGAGAa
cttCCTGTGAgaa
Created
Created
Created
N
N
N
0.003
0.007
-0.037

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