SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
  Home Search Help Download  

PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
RefSeq ID: NM_032957
Gene Symbol: RTEL1
Description: Homo sapiens regulator of telomere elongation helicase 1 (RTEL1), transcript variant 1, mRNA.
Gene Location: chr20(+):62289162-62327606
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr20:g.63695825C>T COSN520037 TCGA-D5-6928-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3117-5p gaagcagAGTGTCatgcag
 0 AGACACUA m6b Created no TS -0.114000 -2.750000
hsa-miR-3194-3p gaaGCAGAGCgtcatgcag
 8
 AGCUCUGC m7b (m7b->m6b) -0.210000 no TS 2.420000
hsa-miR-425-5p gaagcagaGTGTCATgcag
 0 AAUGACAC m7b Created no TS -0.122000 -3.460000
hsa-miR-3117-5p gaagcagAGTGTCatgcag
 0 AGACACUA m6b Created no TS -0.114000 -2.750000
hsa-miR-3194-3p gaaGCAGAGCgtcatgcag
 8
 AGCUCUGC m7b (m7b->m6b) -0.210000 no TS 2.420000
hsa-miR-425-5p gaagcagaGTGTCATgcag
 0 AAUGACAC m7b Created no TS -0.122000 -3.460000
hsa-miR-3117-5p gaagcagAGTGTCatgcag
 0 AGACACUA m6b Created no TS -0.114000 -2.750000
hsa-miR-3194-3p gaaGCAGAGCgtcatgcag
 8
 AGCUCUGC m7b (m7b->m6b) -0.210000 no TS 2.420000
hsa-miR-425-5p gaagcagaGTGTCATgcag
 0 AAUGACAC m7b Created no TS -0.122000 -3.460000

Mutation Mutation ID Sample Name Cancer Type
chr20:g.63695888C>T COSN9147540 AOCS-166-1-2 [ovary][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-449b-3p cacacccaaTGTGGCTtga
 0 CAGCCACA m7b (m6c->m7b) no TS -0.186000 -0.710000

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



Genome Browser