SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
RefSeq ID: NM_173647
Gene Symbol: RNF149
Description: Homo sapiens ring finger protein 149 (RNF149), mRNA.
Gene Location: chr2(-):101892062-101925178
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr2:g.101276276A>T COSN9853731 C0012T [kidney][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3680-3p ctaATGCAAAgcttttgga
 2
 UUUUGCAU m7b (m7b->m6c) -0.038000 no TS 6.780000
hsa-miR-4422 ctaatgcaATGCTTTTgga
 0 AAAAGCAU m8a Created -0.250000 -0.258000 No effect

Mutation Mutation ID Sample Name Cancer Type
chr2:g.101276960A>G COSN6149312 RK135_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-1279 ctctAATATGAaggacagg
 0 UCAUAUUG m7a Created no TS 0.021000 No effect
hsa-miR-205-5p ctctaatATGAAGGAcagg
 0 UCCUUCAU m8a Created no TS -0.264000 -8.320000
hsa-miR-5007-3p ctctaATATGAaggacagg
 0 AUCAUAUG m6b Created no TS -0.001000 -2.560000

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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