SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
RefSeq ID: NM_173560
Gene Symbol: RFX6
Description: Homo sapiens regulatory factor X, 6 (RFX6), mRNA.
Gene Location: chr6(+):117198375-117253326
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr6:g.116931904G>A COSN8493524 2296_T [lung][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-4251 aggaTCTCAGaatcattgt
 8
 CCUGAGAA m6b Disrupted -0.109000 no TS 6.390000
hsa-miR-4329 aggaTCTCAGaatcattgt
 8
 CCUGAGAC m6b Disrupted -0.121000 no TS 10.390000

Mutation Mutation ID Sample Name Cancer Type
chr6:g.116931988T>G COSN7782392 PCSI_0164_Pa_P_526 [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-1264 ggtcAAGACTTaattcaat
 0 CAAGUCUU m7b Disrupted -0.221000 no TS 1.400000
hsa-miR-3184-3p ggtcaAGACTTaattcaat
 0 AAAGUCUC m6b Disrupted -0.091000 no TS 1.360000

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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