SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_001003793 |
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Gene Symbol: | RBMS3 |
Description: | Homo sapiens RNA binding motif, single stranded interacting protein 3 (RBMS3), transcript variant 3, mRNA. |
Gene Location: | chr3(+):29322802-30051886 |
Browse Associations |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr3:g.30003985T>G | COSN4816922 | tumor_4102009 | [haematopoietic_and_lymphoid_tissue][NS][lymphoid_neoplasm][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-3529-3p |
gttgTTGTTGTTtttttag |
5 |
AACAACAA | m8a | Created | -0.596000 | -0.697000 |
0.010000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr3:g.30005197A>C | 9_105721 | CRC-9-Tumor | Colorectal adenocarcinoma | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-1271-5p |
acataGTGCCAAaaaaaaa |
17 |
CUUGGCAC | m7b | Created | no TS | -0.139 |
-8.8 |
hsa-miR-129-5p |
acatagtGCAAAAAaaaaa |
17 |
CUUUUUGC | m7b | Disrupted | 0.984 | 1.026 | No effect |
hsa-miR-182-5p |
acatagTGCCAAAaaaaaa |
17 |
UUUGGCAA | m7a | Created | no TS | -0.025 |
-1.63 |
hsa-miR-3680-3p |
acatagTGCAAAAaaaaaa |
17 |
UUUUGCAU | m7a | Disrupted | 0.246 | 0.201 |
1.11 |
hsa-miR-4325 |
acatAGTGCAAaaaaaaaa |
5 |
UUGCACUU | m7a | Disrupted | -0.218 | -0.183 |
0.08 |
hsa-miR-450b-5p |
acatagTGCAAAAaaaaaa |
17 |
UUUUGCAA | m7a | Disrupted | 0.468 | 0.432 |
0.17 |
hsa-miR-507 |
acataGTGCAAAAaaaaaa |
15 |
UUUUGCAC | m8a | Disrupted | -0.186 | -0.143 |
0.06 |
hsa-miR-557 |
acataGTGCAAAaaaaaaa |
17 |
GUUUGCAC | m7b | Disrupted | -0.13 | -0.097 |
0.01 |
hsa-miR-96-5p |
acataGTGCCAAAaaaaaa |
15 |
UUUGGCAC | m8a | Created | no TS | -0.139 |
-3.91 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr3:g.30005318G>A | COSN9719587 | C0012T | [kidney][NS][other][neoplasm] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-15b-3p |
atatgaacTGATTCataga |
0 | CGAAUCAU | m6b | Disrupted | 0.059000 | no TS |
0.040000 |
hsa-miR-183-3p |
atatgaacTAATTCAtaga |
2 |
GUGAAUUA | m7b | Created | 0.222000 | 0.359000 | No effect |
hsa-miR-4277 |
atatGAACTGattcataga |
1 |
GCAGUUCU | m6b | Disrupted | 0.182000 | 0.162000 |
0.880000 |
hsa-miR-5000-5p |
ataTGAACTGattcataga |
0 | CAGUUCAG | m7a | (m7a->m6a) | no TS | 0.045000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr3:g.30006240T>C | COSN1945648 | RK044_C01 | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-218-2-3p |
aaaggtaAACCATattccc |
3 |
CAUGGUUC | m6b | Created | -0.080000 | -0.051000 | No effect |
hsa-miR-299-5p |
aaagGTAAACCAtattccc |
2 |
UGGUUUAC | m8a | Created | -0.015000 | -0.016000 |
-0.060000 |
hsa-miR-4517 |
aaaggtaaaTCATATTccc |
0 | AAAUAUGA | m7b | (m7b->m6c) | -0.009000 | -0.092000 | No effect |
hsa-miR-5583-3p |
aaaggtaaaCCATATTCcc |
9 |
GAAUAUGG | m8a | (m7b->m8a) | -0.084000 | -0.058000 |
-0.010000 |
hsa-miR-584-5p |
aaaggtaAACCATAttccc |
3 |
UUAUGGUU | m7b | Created | 0.037000 | 0.024000 |
-1.560000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr3:g.30006343G>C | COSN5043632 | HX33T | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-1193 |
caaccCCATCCactggaag |
0 | GGGAUGGU | m6b | Created | no TS | 0.013000 | No effect |
hsa-miR-148a-3p |
caaccccaTGCACTGgaag |
0 | UCAGUGCA | m7b | Disrupted | 0.019000 | no TS |
0.420000 |
hsa-miR-148b-3p |
caaccccaTGCACTGgaag |
0 | UCAGUGCA | m7b | Disrupted | 0.019000 | no TS |
0.100000 |
hsa-miR-152 |
caaccccaTGCACTGgaag |
0 | UCAGUGCA | m7b | Disrupted | 0.019000 | no TS |
1.170000 |
hsa-miR-1825 |
caaccccatGCACTGGAag |
0 | UCCAGUGC | m8a | (m8a->m7b) | -0.048000 | 0.019000 |
1.150000 |
hsa-miR-194-3p |
caaccccatCCACTGGaag |
6 |
CCAGUGGG | m7a | (m6b->m7a) | -0.005000 | -0.005000 |
-0.210000 |
hsa-miR-3681-5p |
caaccccATCCACTggaag |
2 |
UAGUGGAU | m7b | Created | -0.089000 | -0.020000 |
-0.240000 |
hsa-miR-3691-5p |
caacccCATCCACTggaag |
8 |
AGUGGAUG | m8a | Created | -0.026000 | 0.038000 |
-0.800000 |
hsa-miR-432-3p |
caaccCCATCCActggaag |
0 | CUGGAUGG | m7b | Created | no TS | 0.036000 |
-0.030000 |
hsa-miR-5011-3p |
caaccCCATGCACtggaag |
0 | GUGCAUGG | m8a | Disrupted | 0.008000 | -0.016000 |
0.260000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr3:g.30006837G>A | COSN1945649 | RK052_C01 | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-101-5p |
tgtgcctaGATAACTtcct |
0 | CAGUUAUC | m7b | Created | no TS | 0.047000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr3:g.30007492T>C | COSN6765227 | RK070_C01 | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr3:g.30008502G>T | COSN9719588 | C0074T | [kidney][NS][other][neoplasm] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-3185 |
tattactttTTCTTCagta |
0 | AGAAGAAG | m6b | Created | -0.093000 | -0.014000 |
-0.290000 |
hsa-miR-3973 |
tatTACTTTGTcttcagta |
4 |
ACAAAGUA | m8a | Disrupted | 0.052000 | 0.018000 | No effect |
hsa-miR-548a-5p |
taTTACTTTTtcttcagta |
0 | AAAAGUAA | m8a | (m7a->m8a) | 0.100000 | 0.073000 |
0.060000 |
hsa-miR-548ab |
taTTACTTTTtcttcagta |
0 | AAAAGUAA | m8a | (m7a->m8a) | 0.081000 | 0.054000 |
0.110000 |
hsa-miR-548ak |
taTTACTTTTtcttcagta |
0 | AAAAGUAA | m8a | (m7a->m8a) | 0.100000 | 0.073000 | No effect |
hsa-miR-548am-5p |
taTTACTTTTtcttcagta |
0 | AAAAGUAA | m8a | (m7a->m8a) | 0.100000 | 0.073000 |
0.110000 |
hsa-miR-548ap-5p |
taTTACTTTTtcttcagta |
0 | AAAAGUAA | m8a | (m7a->m8a) | 0.100000 | 0.073000 |
0.030000 |
hsa-miR-548ar-5p |
taTTACTTTTtcttcagta |
0 | AAAAGUAA | m8a | (m7a->m8a) | 0.100000 | 0.073000 |
0.030000 |
hsa-miR-548as-5p |
taTTACTTTTtcttcagta |
0 | AAAAGUAA | m8a | (m7a->m8a) | 0.100000 | 0.073000 |
0.660000 |
hsa-miR-548au-5p |
taTTACTTTTtcttcagta |
0 | AAAAGUAA | m8a | (m7a->m8a) | 0.100000 | 0.073000 |
0.100000 |
hsa-miR-548b-5p |
taTTACTTTTtcttcagta |
0 | AAAAGUAA | m8a | (m7a->m8a) | 0.100000 | 0.073000 |
0.080000 |
hsa-miR-548c-5p |
taTTACTTTTtcttcagta |
0 | AAAAGUAA | m8a | (m7a->m8a) | 0.100000 | 0.073000 |
0.110000 |
hsa-miR-548d-5p |
taTTACTTTTtcttcagta |
0 | AAAAGUAA | m8a | (m7a->m8a) | 0.100000 | 0.073000 |
0.060000 |
hsa-miR-548h-5p |
taTTACTTTTtcttcagta |
0 | AAAAGUAA | m8a | (m7a->m8a) | 0.100000 | 0.073000 |
0.020000 |
hsa-miR-548i |
taTTACTTTTtcttcagta |
0 | AAAAGUAA | m8a | (m7a->m8a) | 0.081000 | 0.054000 |
0.130000 |
hsa-miR-548j |
taTTACTTTTtcttcagta |
0 | AAAAGUAA | m8a | (m7a->m8a) | 0.100000 | 0.073000 |
0.230000 |
hsa-miR-548n |
tatTACTTTTtcttcagta |
0 | CAAAAGUA | m7b | (m6b->m7b) | -0.067000 | 0.015000 |
-0.060000 |
hsa-miR-548o-5p |
taTTACTTTTtcttcagta |
0 | AAAAGUAA | m8a | (m7a->m8a) | 0.100000 | 0.073000 |
0.110000 |
hsa-miR-548w |
taTTACTTTTtcttcagta |
0 | AAAAGUAA | m8a | (m7a->m8a) | 0.100000 | 0.073000 | No effect |
hsa-miR-548y |
taTTACTTTTtcttcagta |
0 | AAAAGUAA | m8a | (m7a->m8a) | 0.118000 | 0.091000 |
0.010000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr3:g.30008904T>A | COSN15293743 | 0065_CRUK_PC_0065_T1_DNA | [prostate][NS][carcinoma][adenocarcinoma] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr3:g.30009113G>A | COSN7605457 | 8016470 | [pancreas][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-100-3p |
gtCAAGCTTGgatctgcag |
0 | CAAGCUUG | m8a | (m8a->m7a) | 0.146000 | 0.118000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr3:g.30009433G>C | COSN15394591 | AOCS-092-1-6 | [ovary][NS][other][neoplasm] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr3:g.30009692T>A | COSN7605458 | 8031681 | [pancreas][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-30a-5p |
gcatTGTTTACAttacatt |
0 | UGUAAACA | m8a | Created | no TS | -0.107000 |
-0.010000 |
hsa-miR-30b-5p |
gcatTGTTTACAttacatt |
0 | UGUAAACA | m8a | Created | no TS | -0.138000 |
-0.060000 |
hsa-miR-30c-5p |
gcatTGTTTACAttacatt |
0 | UGUAAACA | m8a | Created | no TS | -0.138000 |
-0.010000 |
hsa-miR-30d-5p |
gcatTGTTTACAttacatt |
0 | UGUAAACA | m8a | Created | no TS | -0.107000 |
-0.030000 |
hsa-miR-30e-5p |
gcatTGTTTACAttacatt |
0 | UGUAAACA | m8a | Created | no TS | -0.128000 |
-0.010000 |
hsa-miR-4495 |
gcattgTTTACATTacatt |
3 |
AAUGUAAA | m8a | Created | 0.368000 | 0.376000 |
-3.160000 |
hsa-miR-570-3p |
gcatTGTTTTCattacatt |
18 |
CGAAAACA | m7b | Disrupted | 0.236000 | 0.332000 |
0.040000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr3:g.30010163G>T | COSN5534431 | RK030_C01 | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-148a-5p |
ttcaattttGAACTTTatt |
0 | AAAGUUCU | m7a | (m7a->m6b) | 0.009000 | 0.009000 | No effect |
hsa-miR-4698 |
ttcaATTTTGAactttatt |
3 |
UCAAAAUG | m7a | Disrupted | 0.248000 | 0.225000 | No effect |
hsa-miR-548at-5p |
ttcaattttTAACTTTatt |
4 |
AAAAGUUA | m7b | (m6c->m7b) | -0.059000 | -0.217000 | No effect |
hsa-miR-548c-3p |
ttcaATTTTTaactttatt |
0 | CAAAAAUC | m6b | Created | 0.648000 | 0.738000 |
-0.040000 |