SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
RefSeq ID: NM_001003792
Gene Symbol: RBMS3
Description: Homo sapiens RNA binding motif, single stranded interacting protein 3 (RBMS3), transcript variant 3, mRNA.
Gene Location: chr3(+):29322802-30051886
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr3:g.30003985T>G COSN4816922 tumor_4102009 [haematopoietic_and_lymphoid_tissue][NS][lymphoid_neoplasm][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3529-3p gttgTTGTTGTTtttttag
 5
 AACAACAA m8a Created -0.596000 -0.697000 0.010000

Mutation Mutation ID Sample Name Cancer Type
chr3:g.30005197A>C 9_105721 CRC-9-Tumor Colorectal adenocarcinoma
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-1271-5p acataGTGCCAAaaaaaaa
 17
 CUUGGCAC m7b Created no TS -0.139 -8.8
hsa-miR-129-5p acatagtGCAAAAAaaaaa
 17
 CUUUUUGC m7b Disrupted 0.984 1.026 No effect
hsa-miR-182-5p acatagTGCCAAAaaaaaa
 17
 UUUGGCAA m7a Created no TS -0.025 -1.63
hsa-miR-3680-3p acatagTGCAAAAaaaaaa
 17
 UUUUGCAU m7a Disrupted 0.246 0.201 1.11
hsa-miR-4325 acatAGTGCAAaaaaaaaa
 5
 UUGCACUU m7a Disrupted -0.218 -0.183 0.08
hsa-miR-450b-5p acatagTGCAAAAaaaaaa
 17
 UUUUGCAA m7a Disrupted 0.468 0.432 0.17
hsa-miR-507 acataGTGCAAAAaaaaaa
 15
 UUUUGCAC m8a Disrupted -0.186 -0.143 0.06
hsa-miR-557 acataGTGCAAAaaaaaaa
 17
 GUUUGCAC m7b Disrupted -0.13 -0.097 0.01
hsa-miR-96-5p acataGTGCCAAAaaaaaa
 15
 UUUGGCAC m8a Created no TS -0.139 -3.91

Mutation Mutation ID Sample Name Cancer Type
chr3:g.30005318G>A COSN9719587 C0012T [kidney][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-15b-3p atatgaacTGATTCataga
 0 CGAAUCAU m6b Disrupted 0.059000 no TS 0.040000
hsa-miR-183-3p atatgaacTAATTCAtaga
 2
 GUGAAUUA m7b Created 0.222000 0.359000 No effect
hsa-miR-4277 atatGAACTGattcataga
 1
 GCAGUUCU m6b Disrupted 0.182000 0.162000 0.880000
hsa-miR-5000-5p ataTGAACTGattcataga
 0 CAGUUCAG m7a (m7a->m6a) no TS 0.045000 No effect

Mutation Mutation ID Sample Name Cancer Type
chr3:g.30006240T>C COSN1945648 RK044_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-218-2-3p aaaggtaAACCATattccc
 3
 CAUGGUUC m6b Created -0.080000 -0.051000 No effect
hsa-miR-299-5p aaagGTAAACCAtattccc
 2
 UGGUUUAC m8a Created -0.015000 -0.016000 -0.060000
hsa-miR-4517 aaaggtaaaTCATATTccc
 0 AAAUAUGA m7b (m7b->m6c) -0.009000 -0.092000 No effect
hsa-miR-5583-3p aaaggtaaaCCATATTCcc
 9
 GAAUAUGG m8a (m7b->m8a) -0.084000 -0.058000 -0.010000
hsa-miR-584-5p aaaggtaAACCATAttccc
 3
 UUAUGGUU m7b Created 0.037000 0.024000 -1.560000

Mutation Mutation ID Sample Name Cancer Type
chr3:g.30006343G>C COSN5043632 HX33T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-1193 caaccCCATCCactggaag
 0 GGGAUGGU m6b Created no TS 0.013000 No effect
hsa-miR-148a-3p caaccccaTGCACTGgaag
 0 UCAGUGCA m7b Disrupted 0.019000 no TS 0.420000
hsa-miR-148b-3p caaccccaTGCACTGgaag
 0 UCAGUGCA m7b Disrupted 0.019000 no TS 0.100000
hsa-miR-152 caaccccaTGCACTGgaag
 0 UCAGUGCA m7b Disrupted 0.019000 no TS 1.170000
hsa-miR-1825 caaccccatGCACTGGAag
 0 UCCAGUGC m8a (m8a->m7b) -0.048000 0.019000 1.150000
hsa-miR-194-3p caaccccatCCACTGGaag
 6
 CCAGUGGG m7a (m6b->m7a) -0.005000 -0.005000 -0.210000
hsa-miR-3681-5p caaccccATCCACTggaag
 2
 UAGUGGAU m7b Created -0.089000 -0.020000 -0.240000
hsa-miR-3691-5p caacccCATCCACTggaag
 8
 AGUGGAUG m8a Created -0.026000 0.038000 -0.800000
hsa-miR-432-3p caaccCCATCCActggaag
 0 CUGGAUGG m7b Created no TS 0.036000 -0.030000
hsa-miR-5011-3p caaccCCATGCACtggaag
 0 GUGCAUGG m8a Disrupted 0.008000 -0.016000 0.260000

Mutation Mutation ID Sample Name Cancer Type
chr3:g.30006837G>A COSN1945649 RK052_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-101-5p tgtgcctaGATAACTtcct
 0 CAGUUAUC m7b Created no TS 0.047000 No effect


Mutation Mutation ID Sample Name Cancer Type
chr3:g.30007492T>C COSN6765227 RK070_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr3:g.30008502G>T COSN9719588 C0074T [kidney][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3185 tattactttTTCTTCagta
 0 AGAAGAAG m6b Created -0.093000 -0.014000 -0.290000
hsa-miR-3973 tatTACTTTGTcttcagta
 4
 ACAAAGUA m8a Disrupted 0.052000 0.018000 No effect
hsa-miR-548a-5p taTTACTTTTtcttcagta
 0 AAAAGUAA m8a (m7a->m8a) 0.100000 0.073000 0.060000
hsa-miR-548ab taTTACTTTTtcttcagta
 0 AAAAGUAA m8a (m7a->m8a) 0.081000 0.054000 0.110000
hsa-miR-548ak taTTACTTTTtcttcagta
 0 AAAAGUAA m8a (m7a->m8a) 0.100000 0.073000 No effect
hsa-miR-548am-5p taTTACTTTTtcttcagta
 0 AAAAGUAA m8a (m7a->m8a) 0.100000 0.073000 0.110000
hsa-miR-548ap-5p taTTACTTTTtcttcagta
 0 AAAAGUAA m8a (m7a->m8a) 0.100000 0.073000 0.030000
hsa-miR-548ar-5p taTTACTTTTtcttcagta
 0 AAAAGUAA m8a (m7a->m8a) 0.100000 0.073000 0.030000
hsa-miR-548as-5p taTTACTTTTtcttcagta
 0 AAAAGUAA m8a (m7a->m8a) 0.100000 0.073000 0.660000
hsa-miR-548au-5p taTTACTTTTtcttcagta
 0 AAAAGUAA m8a (m7a->m8a) 0.100000 0.073000 0.100000
hsa-miR-548b-5p taTTACTTTTtcttcagta
 0 AAAAGUAA m8a (m7a->m8a) 0.100000 0.073000 0.080000
hsa-miR-548c-5p taTTACTTTTtcttcagta
 0 AAAAGUAA m8a (m7a->m8a) 0.100000 0.073000 0.110000
hsa-miR-548d-5p taTTACTTTTtcttcagta
 0 AAAAGUAA m8a (m7a->m8a) 0.100000 0.073000 0.060000
hsa-miR-548h-5p taTTACTTTTtcttcagta
 0 AAAAGUAA m8a (m7a->m8a) 0.100000 0.073000 0.020000
hsa-miR-548i taTTACTTTTtcttcagta
 0 AAAAGUAA m8a (m7a->m8a) 0.081000 0.054000 0.130000
hsa-miR-548j taTTACTTTTtcttcagta
 0 AAAAGUAA m8a (m7a->m8a) 0.100000 0.073000 0.230000
hsa-miR-548n tatTACTTTTtcttcagta
 0 CAAAAGUA m7b (m6b->m7b) -0.067000 0.015000 -0.060000
hsa-miR-548o-5p taTTACTTTTtcttcagta
 0 AAAAGUAA m8a (m7a->m8a) 0.100000 0.073000 0.110000
hsa-miR-548w taTTACTTTTtcttcagta
 0 AAAAGUAA m8a (m7a->m8a) 0.100000 0.073000 No effect
hsa-miR-548y taTTACTTTTtcttcagta
 0 AAAAGUAA m8a (m7a->m8a) 0.118000 0.091000 0.010000


Mutation Mutation ID Sample Name Cancer Type
chr3:g.30008904T>A COSN15293743 0065_CRUK_PC_0065_T1_DNA [prostate][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr3:g.30009113G>A COSN7605457 8016470 [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-100-3p gtCAAGCTTGgatctgcag
 0 CAAGCUUG m8a (m8a->m7a) 0.146000 0.118000 No effect


Mutation Mutation ID Sample Name Cancer Type
chr3:g.30009433G>C COSN15394591 AOCS-092-1-6 [ovary][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr3:g.30009692T>A COSN7605458 8031681 [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-30a-5p gcatTGTTTACAttacatt
 0 UGUAAACA m8a Created no TS -0.107000 -0.010000
hsa-miR-30b-5p gcatTGTTTACAttacatt
 0 UGUAAACA m8a Created no TS -0.138000 -0.060000
hsa-miR-30c-5p gcatTGTTTACAttacatt
 0 UGUAAACA m8a Created no TS -0.138000 -0.010000
hsa-miR-30d-5p gcatTGTTTACAttacatt
 0 UGUAAACA m8a Created no TS -0.107000 -0.030000
hsa-miR-30e-5p gcatTGTTTACAttacatt
 0 UGUAAACA m8a Created no TS -0.128000 -0.010000
hsa-miR-4495 gcattgTTTACATTacatt
 3
 AAUGUAAA m8a Created 0.368000 0.376000 -3.160000
hsa-miR-570-3p gcatTGTTTTCattacatt
 18
 CGAAAACA m7b Disrupted 0.236000 0.332000 0.040000

Mutation Mutation ID Sample Name Cancer Type
chr3:g.30010163G>T COSN5534431 RK030_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-148a-5p ttcaattttGAACTTTatt
 0 AAAGUUCU m7a (m7a->m6b) 0.009000 0.009000 No effect
hsa-miR-4698 ttcaATTTTGAactttatt
 3
 UCAAAAUG m7a Disrupted 0.248000 0.225000 No effect
hsa-miR-548at-5p ttcaattttTAACTTTatt
 4
 AAAAGUUA m7b (m6c->m7b) -0.059000 -0.217000 No effect
hsa-miR-548c-3p ttcaATTTTTaactttatt
 0 CAAAAAUC m6b Created 0.648000 0.738000 -0.040000

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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