SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
||||||||
Home | Search | Help | Download |
RefSeq ID: | NM_012294 |
---|---|
Gene Symbol: | RAPGEF5 |
Description: | Homo sapiens Rap guanine nucleotide exchange factor (GEF) 5 (RAPGEF5), mRNA. |
Gene Location: | chr7(-):22157907-22396533 |
Browse Associations |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr7:g.22118386T>C | COSN14733757 | CHC205T | [liver][NS][carcinoma][hepatocellular_carcinoma] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-379-3p |
taaaacTTACATAagtaac |
2 |
UAUGUAAC | m7a | Created | 0.077000 | 0.004000 | No effect | |
hsa-miR-380-3p |
taaaacTTACATAagtaac |
2 |
UAUGUAAU | m7a | Created | 0.082000 | 0.014000 | No effect | |
hsa-miR-3924 |
taaaactTACATAagtaac |
0 | AUAUGUAU | m6b | Created | no TS | -0.051000 | No effect | |
hsa-miR-410 |
taaaacTTATATaagtaac |
9 |
AAUAUAAC | m6b | Disrupted | -0.007000 | no TS |
0.050000 |
|
hsa-miR-411-3p |
taaaacTTACATAagtaac |
2 |
UAUGUAAC | m7a | Created | 0.077000 | 0.004000 | No effect | |
hsa-miR-4495 |
taaaacTTACATaagtaac |
1 |
AAUGUAAA | m6b | Created | 0.138000 | 0.079000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr7:g.22118532A>T | COSN8516268 | J30_T | [lung][NS][carcinoma][squamous_cell_carcinoma] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-1208 |
ttgccattAACAGTGtttt |
10 |
UCACUGUU | m7b | Disrupted | -0.155000 | 0.040000 |
0.010000 |
|
hsa-miR-2053 |
ttgccATTAACAgtgtttt |
13 |
GUGUUAAU | m7b | Disrupted | 0.066000 | 0.093000 |
-0.010000 |
|
hsa-miR-569 |
ttgcCATTAACagtgtttt |
13 |
AGUUAAUG | m7b | Disrupted | -0.361000 | -0.167000 |
0.010000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr7:g.22118700A>T | COSN7974708 | 8047810 | [pancreas][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-4662a-3p |
taatgTATCTTTaattagg |
0 | AAAGAUAG | m7a | Created | NA | NA |
-0.040000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr7:g.22119441A>G | COSN6875780 | RK053_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-let-7a-3p |
gtcatcTGTATAattgcca |
13 |
CUAUACAA | m6b | Disrupted | 0.058000 | -0.011000 |
0.500000 |
|
hsa-let-7b-3p |
gtcatcTGTATAattgcca |
13 |
CUAUACAA | m6b | Disrupted | 0.058000 | -0.011000 |
0.770000 |
|
hsa-let-7f-1-3p |
gtcatcTGTATAattgcca |
13 |
CUAUACAA | m6b | Disrupted | 0.055000 | -0.018000 |
0.150000 |
|
hsa-let-7f-2-3p |
gtcatCTGTATAattgcca |
16 |
CUAUACAG | m7b | Disrupted | -0.269000 | -0.272000 |
0.170000 |
|
hsa-miR-1185-1-3p |
gtcatCTGTATAattgcca |
16 |
AUAUACAG | m7b | Disrupted | -0.281000 | -0.263000 | No effect | |
hsa-miR-1185-2-3p |
gtcatCTGTATAattgcca |
16 |
AUAUACAG | m7b | Disrupted | -0.281000 | -0.263000 | No effect | |
hsa-miR-4275 |
gtcatctgtGTAATTGcca |
0 | CCAAUUAC | m7b | (m6b->m7b) | no TS | 0.046000 | No effect | |
hsa-miR-466 |
gtcatcTGTGTAattgcca |
0 | AUACACAU | m6b | Created | no TS | 0.012000 |
-0.790000 |
|
hsa-miR-4672 |
gtcatCTGTGTAAttgcca |
14 |
UUACACAG | m8a | Created | -0.431000 | -0.537000 |
-0.110000 |
|
hsa-miR-4789-5p |
gtcatcTGTATAattgcca |
3 |
GUAUACAC | m6b | Disrupted | -0.101000 | -0.163000 | No effect | |
hsa-miR-5683 |
gtCATCTGTAtaattgcca |
0 | UACAGAUG | m8a | (m8a->m7b) | -0.073000 | -0.034000 |
0.060000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr7:g.22119499A>G | COSN2216174 | RK007_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-223-5p |
gttttacATACACatttgc |
1 |
CGUGUAUU | m6b | Disrupted | 0.003000 | 0.010000 |
0.090000 |
|
hsa-miR-297 |
gttttACATACAcatttgc |
3 |
AUGUAUGU | m7b | Disrupted | -0.040000 | no TS | No effect | |
hsa-miR-4666b |
gttttACATGCAcatttgc |
2 |
UUGCAUGU | m7b | Created | -0.299000 | -0.391000 |
-0.210000 |
|
hsa-miR-5011-3p |
gttttaCATGCACatttgc |
2 |
GUGCAUGG | m7a | Created | -0.034000 | -0.034000 | No effect | |
hsa-miR-567 |
gttttACATACacatttgc |
3 |
AGUAUGUU | m6b | Disrupted | 0.010000 | no TS |
1.760000 |
|
hsa-miR-223-5p |
gttttacATACACatttgc |
0 | CGUGUAUU | m6b | Disrupted | 0.003 | 0.01 |
0.09 |
|
hsa-miR-297 |
gttttACATACAcatttgc |
0 | AUGUAUGU | m7b | Disrupted | -0.04 | no TS | No effect | |
hsa-miR-4666b |
gttttACATGCAcatttgc |
0 | UUGCAUGU | m7b | Created | -0.299 | -0.391 |
-0.21 |
|
hsa-miR-5011-3p |
gttttaCATGCACatttgc |
0 | GUGCAUGG | m7a | Created | -0.034 | -0.034 | No effect | |
hsa-miR-567 |
gttttACATACacatttgc |
0 | AGUAUGUU | m6b | Disrupted | 0.01 | no TS |
1.76 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr7:g.22119718A>G | COSN14532040 | 8068588 | [pancreas][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-4432 |
actctgcaAGTCTTacgta |
2 |
AAAGACUC | m6b | Created | -0.032000 | 0.050000 |
-0.080000 |
|
hsa-miR-499a-5p |
actctgcaAGTCTTAcgta |
0 | UUAAGACU | m7b | Created | no TS | 0.032000 |
-4.610000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr7:g.22120109C>T | COSN15122694 | SM-4B296 | [oesophagus][NS][carcinoma][adenocarcinoma] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-2392 |
cttttCCATCCTtgtcttc |
0 | UAGGAUGG | m7b | Disrupted | -0.053000 | 0.006000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr7:g.22120260C>G | COSN8299205 | PCSI_0279_Pa_P_526 | [pancreas][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-1183 |
cattttgTACAGTGacttc |
0 | CACUGUAG | m7a | Disrupted | NA | NA | No effect | |
hsa-miR-1283 |
catTTTGTAGAgtgacttc |
0 | UCUACAAA | m8a | Created | no TS | 0.129000 |
-0.090000 |
|
hsa-miR-520d-5p |
catTTTGTAGagtgacttc |
0 | CUACAAAG | m7a | (m6b->m7a) | NA | NA | No effect | |
hsa-miR-524-5p |
catTTTGTAGagtgacttc |
0 | CUACAAAG | m7a | (m6b->m7a) | NA | NA | No effect | |
hsa-miR-668 |
cattttgtaGAGTGACttc |
2 |
UGUCACUC | m7b | (m6b->m7b) | -0.050000 | -0.131000 |
-2.400000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr7:g.22120278A>G | COSN6875781 | RK220_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-21-3p |
aaatgTGGTGTTtaaatgc |
3 |
CAACACCA | m7b | Created | -0.035000 | -0.042000 |
-1.010000 |
|
hsa-miR-3591-3p |
aaatgTGGTGTTTaaatgc |
3 |
AAACACCA | m8a | Created | -0.025000 | -0.023000 |
-1.070000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr7:g.22122024G>A | COSN7974709 | 8031867 | [pancreas][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-130b-5p |
aaacagGAAAGAGTtttta |
3 |
ACUCUUUC | m8a | Created | -0.021000 | -0.160000 |
-0.230000 |
|
hsa-miR-3124-3p |
aaacAGGAAAGagttttta |
10 |
ACUUUCCU | m7b | Created | -0.058000 | -0.239000 | No effect | |
hsa-miR-3667-3p |
aaacAGGAAGGagttttta |
2 |
ACCUUCCU | m7b | Disrupted | -0.264000 | 0.045000 |
0.120000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr7:g.22122280C>A | COSN2216175 | RK083_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-1257 |
agaCATTCACaggaaagcc |
4 |
AGUGAAUG | m7b | (m7b->m6c) | -0.362000 | -0.043000 |
0.010000 |
|
hsa-miR-1914-5p |
agacattCACAGGaaagcc |
0 | CCCUGUGC | m6b | Disrupted | -0.195000 | -0.051000 | No effect | |
hsa-miR-3074-5p |
agacattcaCAGGAAagcc |
11 |
GUUCCUGC | m6b | Disrupted | -0.067000 | no TS | No effect | |
hsa-miR-3121-5p |
agacattCAAAGGAaagcc |
0 | UCCUUUGC | m7a | Created | no TS | -0.101000 |
-0.070000 |
|
hsa-miR-1257 |
agaCATTCACaggaaagcc |
0 | AGUGAAUG | m7b | (m7b->m6c) | -0.362 | -0.043 |
0.01 |
|
hsa-miR-1914-5p |
agacattCACAGGaaagcc |
0 | CCCUGUGC | m6b | Disrupted | -0.195 | -0.051 | No effect | |
hsa-miR-3074-5p |
agacattcaCAGGAAagcc |
0 | GUUCCUGC | m6b | Disrupted | -0.067 | no TS | No effect | |
hsa-miR-3121-5p |
agacattCAAAGGAaagcc |
0 | UCCUUUGC | m7a | Created | no TS | -0.101 |
-0.07 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr7:g.22122297A>G | COSN1347339 | HCC108T | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr7:g.22122395C>G | COSN1347340 | HCC2T | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-1827 |
ccccaCTGCCTCAcctccc |
12 |
UGAGGCAG | m8a | Disrupted | -0.564000 | -0.282000 | No effect |
hsa-miR-2682-5p |
ccccACTGCCTcacctccc |
2 |
CAGGCAGU | m7b | Disrupted | -0.192000 | -0.096000 | No effect |
hsa-miR-34a-5p |
cccCACTGCCtcacctccc |
0 | UGGCAGUG | m7b | (m7b->m6c) | -0.254000 | -0.127000 | No effect |
hsa-miR-34b-5p |
ccccACTGCCTcacctccc |
2 |
UAGGCAGU | m7b | Disrupted | -0.212000 | -0.106000 | No effect |
hsa-miR-34c-5p |
cccCACTGCCTcacctccc |
0 | AGGCAGUG | m8a | Disrupted | -0.236000 | -0.118000 | No effect |
hsa-miR-4316 |
ccccactGCCTCACCtccc |
4 |
GGUGAGGC | m8a | Disrupted | 0.000000 | no TS | No effect |
hsa-miR-449a |
cccCACTGCCtcacctccc |
0 | UGGCAGUG | m7b | (m7b->m6c) | -0.180000 | -0.090000 | No effect |
hsa-miR-449b-5p |
cccCACTGCCTcacctccc |
0 | AGGCAGUG | m8a | Disrupted | -0.180000 | -0.090000 | No effect |
hsa-miR-449c-5p |
ccccACTGCCTcacctccc |
2 |
UAGGCAGU | m7b | Disrupted | -0.212000 | -0.106000 | No effect |
hsa-miR-4710 |
ccccactgCCTCACCtccc |
5 |
GGGUGAGG | m7b | Disrupted | 0.000000 | -0.059000 | No effect |
hsa-miR-1827 |
ccccaCTGCCTCAcctccc |
12 |
UGAGGCAG | m8a | Disrupted | -0.564000 | -0.282000 | No effect |
hsa-miR-2682-5p |
ccccACTGCCTcacctccc |
2 |
CAGGCAGU | m7b | Disrupted | -0.192000 | -0.096000 | No effect |
hsa-miR-34a-5p |
cccCACTGCCtcacctccc |
0 | UGGCAGUG | m7b | (m7b->m6c) | -0.254000 | -0.127000 | No effect |
hsa-miR-34b-5p |
ccccACTGCCTcacctccc |
2 |
UAGGCAGU | m7b | Disrupted | -0.212000 | -0.106000 | No effect |
hsa-miR-34c-5p |
cccCACTGCCTcacctccc |
0 | AGGCAGUG | m8a | Disrupted | -0.236000 | -0.118000 | No effect |
hsa-miR-4316 |
ccccactGCCTCACCtccc |
4 |
GGUGAGGC | m8a | Disrupted | 0.000000 | no TS | No effect |
hsa-miR-449a |
cccCACTGCCtcacctccc |
0 | UGGCAGUG | m7b | (m7b->m6c) | -0.180000 | -0.090000 | No effect |
hsa-miR-449b-5p |
cccCACTGCCTcacctccc |
0 | AGGCAGUG | m8a | Disrupted | -0.180000 | -0.090000 | No effect |
hsa-miR-449c-5p |
ccccACTGCCTcacctccc |
2 |
UAGGCAGU | m7b | Disrupted | -0.212000 | -0.106000 | No effect |
hsa-miR-4710 |
ccccactgCCTCACCtccc |
5 |
GGGUGAGG | m7b | Disrupted | 0.000000 | -0.059000 | No effect |
hsa-miR-1827 |
ccccaCTGCCTCAcctccc |
0 | UGAGGCAG | m8a | Disrupted | -0.564 | -0.282 | No effect |
hsa-miR-2682-5p |
ccccACTGCCTcacctccc |
0 | CAGGCAGU | m7b | Disrupted | -0.192 | -0.096 | No effect |
hsa-miR-34a-5p |
cccCACTGCCtcacctccc |
0 | UGGCAGUG | m7b | (m7b->m6c) | -0.254 | -0.127 | No effect |
hsa-miR-34b-5p |
ccccACTGCCTcacctccc |
0 | UAGGCAGU | m7b | Disrupted | -0.212 | -0.106 | No effect |
hsa-miR-34c-5p |
cccCACTGCCTcacctccc |
0 | AGGCAGUG | m8a | Disrupted | -0.236 | -0.118 | No effect |
hsa-miR-4316 |
ccccactGCCTCACCtccc |
0 | GGUGAGGC | m8a | Disrupted | 0 | no TS | No effect |
hsa-miR-449a |
cccCACTGCCtcacctccc |
0 | UGGCAGUG | m7b | (m7b->m6c) | -0.18 | -0.09 | No effect |
hsa-miR-449b-5p |
cccCACTGCCTcacctccc |
0 | AGGCAGUG | m8a | Disrupted | -0.18 | -0.09 | No effect |
hsa-miR-449c-5p |
ccccACTGCCTcacctccc |
0 | UAGGCAGU | m7b | Disrupted | -0.212 | -0.106 | No effect |
hsa-miR-4710 |
ccccactgCCTCACCtccc |
0 | GGGUGAGG | m7b | Disrupted | 0 | -0.059 | No effect |
Location | SNP ID | Ancestral Allele |
Allele | miR ID | Conservation | miRSite | FuncClass | Validation | context+ score change |
---|---|---|---|---|---|---|---|---|---|
22118299 | rs148106706 | A | A |
hsa-miR-5585-3p |
4 |
CTATTCAtgcctc |
Disrupted |
N |
-0.139 |
C |
hsa-miR-1827 hsa-miR-6808-5p hsa-miR-6893-5p hsa-miR-940 |
7 9 9 9 |
ctattcCTGCCTC ctattCCTGCCTc ctattCCTGCCTc ctattCCTGCCTc |
Created Created Created Created |
N N N N |
-0.27 -0.326 -0.326 -0.307 |
|||
22120917 | rs115634177 | C | C |
hsa-miR-3197 hsa-miR-6087 hsa-miR-6765-5p |
2 2 2 |
catcaaCGCCTCA catcaaCGCCTCA catcaaCGCCTCA |
Disrupted Disrupted Disrupted |
N N N |
-0.105 -0.08 -0.111 |
T |
hsa-miR-1256 hsa-miR-1827 |
1 2 |
catCAATGCCtca catcaaTGCCTCA |
Created Created |
N N |
-0.037 -0.006 |
|||
22121212 | rs111245004 | - | T |
hsa-miR-4432 hsa-miR-5197-3p |
6 2 |
GAGTCTTctaaaa gagTCTTCTAaaa |
Unknown Unknown |
N N |
-0.118 0.006 |
- |
hsa-miR-1303 |
2 |
gagTCTCTAAAa |
Unknown |
N |
-0.021 |
|||
22122072 | rs139171381 | G | |||||||
T |
hsa-miR-4495 hsa-miR-548u hsa-miR-7161-5p |
2 1 1 |
cgtcTTTACATgc cGTCTTTAcatgc cGTCTTTAcatgc |
Created Created Created |
N N N |
0.02 -0.041 -0.038 |