SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions
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Prediction criteria:	TargetScan sites only     All 6mer or longer seed matches

RefSeq ID:	NM_001100391
Gene Symbol:	RALYL
Description:	Homo sapiens RALY RNA binding protein-like (RALYL), transcript variant 1, mRNA.
Gene Location:	chr8(+):85097099-85834078
Browse Associations

Somatic mutations that impact miRNA target sites

Mutation			Mutation ID		Sample Name		Cancer Type
chr8:g.84921428A>G			COSN5690335		RK143_C01		[liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID	miRSite	Conservation	miRSeed	SeedClass	FuncClass	Wildtype CS+	Mutant CS+	PITA score change
hsa-miR-410	aaaaGTTATATTtctgccc	0	AAUAUAAC	m8a	Disrupted	-0.058000	-0.002000	0.030000
hsa-miR-4803	aaaagTTATGTTtctgccc	8	UAACAUAA	m7b	Created	-0.133000	-0.136000	No effect
hsa-miR-494	aaaagttATGTTTCtgccc	6	UGAAACAU	m7b	Created	-0.121000	-0.195000	-0.040000

Mutation			Mutation ID		Sample Name		Cancer Type
chr8:g.84921582G>A			COSN14731215		CHC322T		[liver][NS][carcinoma][hepatocellular_carcinoma]
miRNA Targets Table
miR ID	miRSite	Conservation	miRSeed	SeedClass	FuncClass	Wildtype CS+	Mutant CS+	PITA score change
hsa-miR-1295b-5p	tcagTCTGGGTatgagatt	4	CACCCAGA	m7b	Disrupted	-0.369000	no TS	6.960000
hsa-miR-1912	tcagTCTGGGTAtgagatt	4	UACCCAGA	m8a	Disrupted	-0.380000	no TS	3.200000
hsa-miR-4482-5p	tcagtCTGGGTatgagatt	4	AACCCAGU	m6b	Disrupted	-0.169000	no TS	3.860000

Mutation			Mutation ID		Sample Name		Cancer Type
chr8:g.84921617C>T			9_91933		CRC-8-Tumor		Colorectal adenocarcinoma
miRNA Targets Table
miR ID	miRSite	Conservation	miRSeed	SeedClass	FuncClass	Wildtype CS+	Mutant CS+	PITA score change
hsa-miR-182-5p	actagaTTGCCAAggaaaa	0	UUUGGCAA	m7b	Disrupted	-0.151	no TS	No effect
hsa-miR-212-5p	actagattGCCAAGGaaaa	0	ACCUUGGC	m7b	Disrupted	-0.464	no TS	1.61

Mutation			Mutation ID		Sample Name		Cancer Type
chr8:g.84921669C>T			COSN6366954		RK308_C01		[liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID	miRSite	Conservation	miRSeed	SeedClass	FuncClass	Wildtype CS+	Mutant CS+	PITA score change
hsa-miR-3171	tagtgcATACATCatgtca	5	AGAUGUAU	m7b	Disrupted	-0.241000	no TS	1.700000
hsa-miR-675-3p	tagtGCATACAtcatgtca	5	CUGUAUGC	m7b	Disrupted	-0.210000	no TS	1.720000

Mutation			Mutation ID		Sample Name		Cancer Type
chr8:g.84921698G>T			COSN9271066		C0028T		[kidney][NS][other][neoplasm]
miRNA Targets Table
miR ID	miRSite	Conservation	miRSeed	SeedClass	FuncClass	Wildtype CS+	Mutant CS+	PITA score change
hsa-miR-384	tgttcCTAGGAActctcca	6	AUUCCUAG	m7b	Disrupted	-0.085000	no TS	2.300000
hsa-miR-5571-3p	tgttCCTAGGAactctcca	3	GUCCUAGG	m7b	Disrupted	-0.376000	no TS	3.110000

Mutation			Mutation ID		Sample Name		Cancer Type
chr8:g.84921794G>C			COSN14989792		SM-4AX85		[oesophagus][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID	miRSite	Conservation	miRSeed	SeedClass	FuncClass	Wildtype CS+	Mutant CS+	PITA score change
hsa-miR-155-3p	cagaccGTAGGAGaattca	0	CUCCUACA	m7a	Disrupted	NA	NA	0.320000
hsa-miR-4279	cagaccgtAGGAGAattca	14	CUCUCCUC	m6b	Disrupted	-0.124000	no TS	0.200000

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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