SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
  Home Search Help Download  

PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
RefSeq ID: NM_001164270
Gene Symbol: RAD51
Description: Homo sapiens RAD51 homolog (S. cerevisiae) (RAD51), transcript variant 4, mRNA.
Gene Location: chr15(+):40987326-41024356
Browse Associations
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr15:g.40731824C>A ICGC_89BE1616-2A78-11E2-96E7-04FD496BB9B8 CPCG_0102_Pr_P_P1 ProstateCancer(OICR,CA)
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3192 gcgcctgtaCTCCCAGcac
 0 UCUGGGAG m7b (m7b->m6c) -0.159 no TS No effect
hsa-miR-5089 gcgcctgtAATCCCAgcac
 0 GUGGGAUU m7b Created -0.122 -0.182 -0.13
hsa-miR-5095 gcGCCTGTAAtcccagcac
 0 UUACAGGC m8a (m7a->m8a) -0.254 -0.41 -0.55

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



Genome Browser