SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database

Prediction criteria: TargetScan sites only     All 6mer or longer seed matches

RefSeq ID: NM_002874
Gene Symbol: RAD23B
Description: Homo sapiens RAD23 homolog B (S. cerevisiae) (RAD23B), transcript variant 2, mRNA.
Gene Location: chr9(+):110045543-110094470
Browse Associations
Browse Pathways

Somatic mutations that impact miRNA target sites



Mutation Mutation ID Sample Name Cancer Type
chr9:g.107329693C>T COSN9275043 C0088T [kidney][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-2054 acaccagtgTATTACActa
0 CUGUAAUA m7b (m6c->m7b) no TS -0.053000 -0.090000
hsa-miR-374c-5p acaccagTGTATTAcacta
10
AUAAUACA m7b Created 0.014000 -0.057000 -0.660000
hsa-miR-501-3p acaccaGTGCATTacacta
0 AAUGCACC m7a Disrupted NA NA 0.080000
hsa-miR-502-3p acaccaGTGCATTacacta
0 AAUGCACC m7a Disrupted NA NA 0.240000
hsa-miR-655 acaccagTGTATTAcacta
10
AUAAUACA m7b Created 0.032000 -0.020000 -1.750000

Mutation Mutation ID Sample Name Cancer Type
chr9:g.107329821A>T COSN8519771 1848_T [lung][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-144-3p gataaATACTGTgcatgtc
0 UACAGUAU m7b Created -0.156000 -0.263000 No effect
hsa-miR-16-1-3p gataAATACTGtgcatgtc
0 CCAGUAUU m7b Created no TS -0.120000 -4.570000
hsa-miR-4742-3p gataAATACAGtgcatgtc
0 UCUGUAUU m7b Disrupted -0.117000 no TS 0.310000

Mutation Mutation ID Sample Name Cancer Type
chr9:g.107331152G>A COSN9694288 AOCS-139-19-0 [ovary][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-1279 tttagcaCAATATGgtgat
0 UCAUAUUG m7b Created no TS 0.019000 -1.360000
hsa-miR-4318 tttagCACAGTatggtgat
1
CACUGUGG m6b Disrupted -0.046000 no TS 0.270000
hsa-miR-4693-5p tttagCACAGTATggtgat
1
AUACUGUG m8a Disrupted -0.025000 no TS 0.010000
hsa-miR-5008-3p tttAGCACAGtatggtgat
11
CCUGUGCU m7b (m7b->m6b) -0.219000 -0.078000 6.520000
hsa-miR-892a tttagCACAGTatggtgat
12
CACUGUGU m6b Disrupted -0.190000 -0.145000 No effect

Mutation Mutation ID Sample Name Cancer Type
chr9:g.107331245A>G ICGC_A62D34A8-2A78-11E2-8335-12FD496BB9B8 CPCG_0102_Pr_P_P2 ProstateCancer(OICR,CA)
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-1295b-3p ctcatGCCTATaatcccag
1
AAUAGGCC m6b Disrupted -0.051 no TS 0.07
hsa-miR-4423-3p ctcaTGCCTATaatcccag
0 AUAGGCAC m7a Disrupted NA NA No effect
hsa-miR-4438 ctcatGCCTGTaatcccag
0 CACAGGCU m6b Created no TS -0.032 No effect
hsa-miR-4514 ctcaTGCCTGTaatcccag
0 ACAGGCAG m7a Created NA NA No effect
hsa-miR-5095 ctcatGCCTGTAAtcccag
0 UUACAGGC m8a Created no TS -0.17 -0.1

Mutation Mutation ID Sample Name Cancer Type
chr9:g.107331689C>A COSN9974986 PTC-73C [thyroid][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-129-5p aactggaaaCAAAAAaaaa
0 CUUUUUGC m6b Disrupted 0.181000 0.122000 0.030000

Mutation Mutation ID Sample Name Cancer Type
chr9:g.107331854A>G COSN5117830 HX31T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-345-5p tcttaaaGAGTCAGCcgag
3
GCUGACUC m8a Created -0.060000 -0.253000 -5.950000

Mutation Mutation ID Sample Name Cancer Type
chr9:g.107331916A>G COSN1371488 HCC73T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-450b-5p gtttaatTTGCAAActgtt
0 UUUUGCAA m7b Created no TS -0.136000 No effect
hsa-miR-518a-5p gtttaaTTTGCAaactgtt
0 CUGCAAAG m6b Created no TS -0.068000 0.240000
hsa-miR-527 gtttaaTTTGCAaactgtt
0 CUGCAAAG m6b Created no TS -0.068000 0.240000
hsa-miR-548aw gtttaaTTTGCAaactgtt
15
GUGCAAAA m6b Created -0.160000 -0.228000 -0.050000
hsa-miR-450b-5p gtttaatTTGCAAActgtt
0 UUUUGCAA m7b Created no TS -0.136000 No effect
hsa-miR-518a-5p gtttaaTTTGCAaactgtt
0 CUGCAAAG m6b Created no TS -0.068000 0.240000
hsa-miR-527 gtttaaTTTGCAaactgtt
0 CUGCAAAG m6b Created no TS -0.068000 0.240000
hsa-miR-548aw gtttaaTTTGCAaactgtt
15
GUGCAAAA m6b Created -0.160000 -0.228000 -0.050000
hsa-miR-450b-5p gtttaatTTGCAAActgtt
0 UUUUGCAA m7b Created no TS -0.136 No effect
hsa-miR-518a-5p gtttaaTTTGCAaactgtt
0 CUGCAAAG m6b Created no TS -0.068 0.24
hsa-miR-527 gtttaaTTTGCAaactgtt
0 CUGCAAAG m6b Created no TS -0.068 0.24
hsa-miR-548aw gtttaaTTTGCAaactgtt
0 GUGCAAAA m6b Created -0.16 -0.228 -0.05

Mutation Mutation ID Sample Name Cancer Type
chr9:g.107331929G>T COSN8117120 8036161 [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-495 actgtTTTGTTaaatctct
0 AAACAAAC m6b Created no TS -0.001000 -2.250000
hsa-miR-5688 actgtTTTGTTAaatctct
0 UAACAAAC m7a Created no TS -0.022000 -6.280000
hsa-miR-7-1-3p actgtTTTGTTaaatctct
0 CAACAAAU m6b Created no TS -0.007000 -0.290000
hsa-miR-7-2-3p actgtTTTGTTaaatctct
0 CAACAAAU m6b Created no TS -0.004000 -0.170000

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



Germline mutations in target sites of miRNAs in somatic mutation table

Location SNP ID Ancestral
Allele
Allele miR ID Conservation miRSite FuncClass Validation context+
score change
107331242 rs11573730 C C hsa-miR-1295b-3p
1
ctcatGCCTATAa
Disrupted
N
-0.051
107331523 rs149796946 A A hsa-miR-586
hsa-miR-6076
hsa-miR-640
hsa-miR-6797-3p
5
8
7
8
tggatcATGCATA
tggaTCATGCAta
TGGATCAtgcata
tggaTCATGCAta
Disrupted
Disrupted
Disrupted
Disrupted
N
N
N
N
-0.055
-0.108
-0.176
-0.112
G hsa-miR-501-3p
hsa-miR-502-3p
5
5
tggatcGTGCATA
tggatcGTGCATA
Created
Created
N
N
-0.122
-0.122
107331689 rs74357018 C C hsa-miR-129-5p
3
tggaaaCAAAAAA
Disrupted
N
0.059
107331690 rs201461138 - AAA hsa-miR-129-5p
2
ctggaaaCAAAAAAaaa
Unknown
N
-0.01
-
107331690 rs5899731 - A hsa-miR-129-5p
3
ggaaaCAAAAAAa
Unknown
N
-0.003
-

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