SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
RefSeq ID: NM_001244713
Gene Symbol: RAD23B
Description: Homo sapiens RAD23 homolog B (S. cerevisiae) (RAD23B), transcript variant 2, mRNA.
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Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr9:g.107329693C>T COSN9275043 C0088T [kidney][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-2054 acaccagtgTATTACActa
 0 CUGUAAUA m7b (m6c->m7b) no TS -0.053000 -0.090000
hsa-miR-374c-5p acaccagTGTATTAcacta
 0 AUAAUACA m7b Created 0.014000 -0.057000 -0.660000
hsa-miR-501-3p acaccaGTGCATTacacta
 0 AAUGCACC m7a Disrupted NA NA 0.080000
hsa-miR-502-3p acaccaGTGCATTacacta
 0 AAUGCACC m7a Disrupted NA NA 0.240000
hsa-miR-655 acaccagTGTATTAcacta
 0 AUAAUACA m7b Created 0.032000 -0.020000 -1.750000

Mutation Mutation ID Sample Name Cancer Type
chr9:g.107329821A>T COSN8519771 1848_T [lung][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-144-3p gataaATACTGTgcatgtc
 0 UACAGUAU m7b Created -0.156000 -0.263000 No effect
hsa-miR-16-1-3p gataAATACTGtgcatgtc
 0 CCAGUAUU m7b Created no TS -0.120000 -4.570000
hsa-miR-4742-3p gataAATACAGtgcatgtc
 0 UCUGUAUU m7b Disrupted -0.117000 no TS 0.310000

Mutation Mutation ID Sample Name Cancer Type
chr9:g.107331152G>A COSN9694288 AOCS-139-19-0 [ovary][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-1279 tttagcaCAATATGgtgat
 0 UCAUAUUG m7b Created no TS 0.019000 -1.360000
hsa-miR-4318 tttagCACAGTatggtgat
 0 CACUGUGG m6b Disrupted -0.046000 no TS 0.270000
hsa-miR-4693-5p tttagCACAGTATggtgat
 0 AUACUGUG m8a Disrupted -0.025000 no TS 0.010000
hsa-miR-5008-3p tttAGCACAGtatggtgat
 0 CCUGUGCU m7b (m7b->m6b) -0.219000 -0.078000 6.520000
hsa-miR-892a tttagCACAGTatggtgat
 0 CACUGUGU m6b Disrupted -0.190000 -0.145000 No effect

Mutation Mutation ID Sample Name Cancer Type
chr9:g.107331245A>G ICGC_A62D34A8-2A78-11E2-8335-12FD496BB9B8 CPCG_0102_Pr_P_P2 ProstateCancer(OICR,CA)
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-1295b-3p ctcatGCCTATaatcccag
 0 AAUAGGCC m6b Disrupted -0.051 no TS 0.07
hsa-miR-4423-3p ctcaTGCCTATaatcccag
 0 AUAGGCAC m7a Disrupted NA NA No effect
hsa-miR-4438 ctcatGCCTGTaatcccag
 0 CACAGGCU m6b Created no TS -0.032 No effect
hsa-miR-4514 ctcaTGCCTGTaatcccag
 0 ACAGGCAG m7a Created NA NA No effect
hsa-miR-5095 ctcatGCCTGTAAtcccag
 0 UUACAGGC m8a Created no TS -0.17 -0.1

Mutation Mutation ID Sample Name Cancer Type
chr9:g.107331689C>A COSN9974986 PTC-73C [thyroid][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-129-5p aactggaaaCAAAAAaaaa
 0 CUUUUUGC m6b Disrupted 0.181000 0.122000 0.030000

Mutation Mutation ID Sample Name Cancer Type
chr9:g.107331854A>G COSN5117830 HX31T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-345-5p tcttaaaGAGTCAGCcgag
 0 GCUGACUC m8a Created -0.060000 -0.253000 -5.950000

Mutation Mutation ID Sample Name Cancer Type
chr9:g.107331916A>G COSN1371488 HCC73T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-450b-5p gtttaatTTGCAAActgtt
 0 UUUUGCAA m7b Created no TS -0.136000 No effect
hsa-miR-518a-5p gtttaaTTTGCAaactgtt
 0 CUGCAAAG m6b Created no TS -0.068000 0.240000
hsa-miR-527 gtttaaTTTGCAaactgtt
 0 CUGCAAAG m6b Created no TS -0.068000 0.240000
hsa-miR-548aw gtttaaTTTGCAaactgtt
 0 GUGCAAAA m6b Created -0.160000 -0.228000 -0.050000
hsa-miR-450b-5p gtttaatTTGCAAActgtt
 0 UUUUGCAA m7b Created no TS -0.136000 No effect
hsa-miR-518a-5p gtttaaTTTGCAaactgtt
 0 CUGCAAAG m6b Created no TS -0.068000 0.240000
hsa-miR-527 gtttaaTTTGCAaactgtt
 0 CUGCAAAG m6b Created no TS -0.068000 0.240000
hsa-miR-548aw gtttaaTTTGCAaactgtt
 0 GUGCAAAA m6b Created -0.160000 -0.228000 -0.050000
hsa-miR-450b-5p gtttaatTTGCAAActgtt
 0 UUUUGCAA m7b Created no TS -0.136 No effect
hsa-miR-518a-5p gtttaaTTTGCAaactgtt
 0 CUGCAAAG m6b Created no TS -0.068 0.24
hsa-miR-527 gtttaaTTTGCAaactgtt
 0 CUGCAAAG m6b Created no TS -0.068 0.24
hsa-miR-548aw gtttaaTTTGCAaactgtt
 0 GUGCAAAA m6b Created -0.16 -0.228 -0.05

Mutation Mutation ID Sample Name Cancer Type
chr9:g.107331929G>T COSN8117120 8036161 [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-495 actgtTTTGTTaaatctct
 0 AAACAAAC m6b Created no TS -0.001000 -2.250000
hsa-miR-5688 actgtTTTGTTAaatctct
 0 UAACAAAC m7a Created no TS -0.022000 -6.280000
hsa-miR-7-1-3p actgtTTTGTTaaatctct
 0 CAACAAAU m6b Created no TS -0.007000 -0.290000
hsa-miR-7-2-3p actgtTTTGTTaaatctct
 0 CAACAAAU m6b Created no TS -0.004000 -0.170000

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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