| SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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| RefSeq ID: | NM_001105244 |
|---|---|
| Gene Symbol: | PTPRM |
| Description: | Homo sapiens protein tyrosine phosphatase, receptor type, M (PTPRM), transcript variant 1, mRNA. |
| Gene Location: | chr18(+):7567313-8406859 |
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| Mutation | Mutation ID | Sample Name | Cancer Type | |||||
|---|---|---|---|---|---|---|---|---|
| chr18:g.8406231A>G | 12_77 | NA | [upper_aerodigestive_tract][mouth][carcinoma][squamous_cell_carcinoma] | |||||
| miRNA Targets Table | ||||||||
| miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
| hsa-miR-3680-3p |
tatttgTGCAAAAgagatg |
0 | UUUUGCAU | m7a | Disrupted | -0.298 | -0.217 |
0.15 |
| hsa-miR-450b-5p |
tatttgTGCAAAAgagatg |
0 | UUUUGCAA | m7a | Disrupted | -0.134 | -0.057 |
0.01 |
| hsa-miR-507 |
tatttGTGCAAAAgagatg |
0 | UUUUGCAC | m8a | Disrupted | -0.427 | -0.073 |
0.03 |
| hsa-miR-557 |
tatttGTGCAAAagagatg |
0 | GUUUGCAC | m7b | Disrupted | -0.386 | -0.063 |
0.01 |
| hsa-miR-130b-5p |
tatttgtgcGAAAGAGatg |
2 |
ACUCUUUC | m7b | (m6c->m7b) | -0.041000 | -0.200000 |
-1.130000 |
| hsa-miR-507 |
tatttGTGCAAAAgagatg |
1 |
UUUUGCAC | m8a | Disrupted | -0.427000 | -0.073000 |
0.030000 |
| hsa-miR-557 |
tatttGTGCAAAagagatg |
1 |
GUUUGCAC | m7b | Disrupted | -0.386000 | -0.063000 |
0.010000 |