SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_001098503 |
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Gene Symbol: | PTPRJ |
Description: | Homo sapiens protein tyrosine phosphatase, receptor type, J (PTPRJ), transcript variant 2, mRNA. |
Gene Location: | chr11(+):48002109-48154266 |
Browse Associations | |
Browse Pathways |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr11:g.48132598T>C | ICGC_8436D3A4-2A78-11E2-96E7-04FD496BB9B8 | CPCG_0102_Pr_P_P1 | ProstateCancer(OICR,CA) | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-4636 |
tgtaaatgACGAGTTaatg |
0 | AACUCGUG | m7a | Created | NA | NA |
-6.81 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr11:g.48132617C>A | ICGC_A8AB75F0-2A78-11E2-8335-12FD496BB9B8 | CPCG_0102_Pr_P_P2 | ProstateCancer(OICR,CA) | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-29b-2-5p |
ggtgcagcAAACCAacatg |
0 | CUGGUUUC | m6b | Created | no TS | -0.045 | No effect | |
hsa-miR-3650 |
ggtgcagCACACCaacatg |
1 |
AGGUGUGU | m6b | Disrupted | -0.159 | no TS |
4.67 |
|
hsa-miR-5087 |
ggtgcagCAAACCaacatg |
0 | GGGUUUGU | m6b | Created | -0.19 | -0.301 |
-1.56 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr11:g.48132648A>T | ICGC_C66A4F3A-2A78-11E2-BDED-1EFD496BB9B8 | CPCG_0103_Pr_P_P4 | ProstateCancer(OICR,CA) | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-4464 |
atatgtaaCAAACCTgcac |
0 | AAGGUUUG | m7b | Disrupted | -0.192 | no TS |
5.48 |
|
hsa-miR-4748 |
atatgtaaCAAACCTgcac |
0 | GAGGUUUG | m7b | Disrupted | -0.173 | no TS |
4.61 |
|
hsa-miR-5087 |
atatgtaACAAACCtgcac |
1 |
GGGUUUGU | m7b | Disrupted | -0.19 | no TS |
6.82 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr11:g.48132658G>A | ICGC_8436D8A4-2A78-11E2-96E7-04FD496BB9B8 | CPCG_0102_Pr_P_P1 | ProstateCancer(OICR,CA) | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr11:g.48132677G>A | ICGC_A8AB7FA0-2A78-11E2-8335-12FD496BB9B8 | CPCG_0102_Pr_P_P2 | ProstateCancer(OICR,CA) | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-148a-5p |
tgtaccctAGAACTTaaag |
0 | AAAGUUCU | m7b | Disrupted | -0.315 | no TS |
-3.55 |
hsa-miR-148b-5p |
tgtaccctAGAACTTaaag |
0 | AAGUUCUG | m7a | Disrupted | NA | NA |
-3.99 |
hsa-miR-2909 |
tgtaCCCTAAaacttaaag |
0 | GUUAGGGC | m6b | Created | no TS | -0.183 | No effect |
hsa-miR-3168 |
tgtacccTAGAACTtaaag |
1 |
GAGUUCUA | m7b | Disrupted | -0.157 | no TS | No effect |
Location | SNP ID | Ancestral Allele |
Allele | miR ID | Conservation | miRSite | FuncClass | Validation | context+ score change |
---|---|---|---|---|---|---|---|---|---|
48132683 | rs35644484 | - | - |
hsa-miR-148a-5p |
1 |
GAACTTAaagtat |
Unknown |
N |
0.003 |
A |
hsa-miR-5003-3p hsa-miR-7856-5p |
1 1 |
gaacttAAAAGTAt gaaCTTAAAAgtat |
Unknown Unknown |
N N |
-0.049 -0.02 |